Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00348 ATGCCTTCTCTCTCTCTCCTCTGCATTTTTGCTTCTCTCTCCTCCCTCTTCCTCCTCTCCCATGCCAGAATCCCCGGCGTCTACTCCGGCGGCCCCTGGCTGGACGCTCACGCCACCTTCTACGGCGGAAGCGACGCCTCCGGAACCATGGGCGGCGCGTGTGGGTATGGGAATCTCTACAGTCAGGGCTACGGCGTCAACACGGCGGCGCTGAGTACGGCTCTGTTCAATAATGGCTTTAGCTGCGGCGCTTGCTTTGAAATCAAGTGCGTTAATGATCCCCAATGGTGCCATTCCGGTAGCCCTTCTATTTTCATTACCGCTACCAATTTCTGTCCCCCTAATTTTGCTCTTCCCAACGACAATGGCGGCTGGTGTAACCCTCCTCGCACTCATTTTGACCTCGCCATGCCTATGTTCCTCAAGATCGCCGAGTACCGTGCCGGAATCGTCCCCGTCGCTTACCGCCGGTGA 474 57.17 MPSLSLLCIFASLSSLFLLSHARIPGVYSGGPWLDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCVNDPQWCHSGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVAYRR 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3058720 3059312 + Cp4.1LG19g03470.1 Cpe19g00348 485756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00348 157 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Cpe19g00348 157 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Cpe19g00348 157 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Cpe19g00348 157 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Cpe19g00348 157 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Cpe19g00348 157 PANTHER EXPANSIN 3 157 - -
Cpe19g00348 157 PANTHER EXPANSIN-A15 3 157 IPR002963 GO:0009664
Cpe19g00348 157 SUPERFAMILY Barwin-like endoglucanases 32 157 IPR036908 -
Cpe19g00348 157 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 157 IPR007112 -
Cpe19g00348 157 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Cpe19g00348 157 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Cpe19g00348 157 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Cpe19g00348 157 PRINTS Expansin/Lol pI family signature 148 157 IPR007118 GO:0005576
Cpe19g00348 157 Pfam Lytic transglycolase 68 155 IPR009009 -
Cpe19g00348 157 SMART dpbb_1 68 155 IPR007112 -
Cpe19g00348 157 Gene3D - 20 157 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00348 Cpe-Chr19:3058720 Cpe04g01494 Cpe-Chr4:11841897 6.28E-71 dispersed
Cpe01g00178 Cpe-Chr1:1002796 Cpe19g00348 Cpe-Chr19:3058720 7.06E-92 wgd
Cpe01g01088 Cpe-Chr1:6418949 Cpe19g00348 Cpe-Chr19:3058720 5.80E-68 wgd
Cpe01g02305 Cpe-Chr1:19451816 Cpe19g00348 Cpe-Chr19:3058720 2.54E-87 wgd
Cpe10g00890 Cpe-Chr10:5008797 Cpe19g00348 Cpe-Chr19:3058720 2.88E-96 wgd
Cpe16g00619 Cpe-Chr16:6736333 Cpe19g00348 Cpe-Chr19:3058720 1.97E-97 wgd
Cpe19g00348 Cpe-Chr19:3058720 Cpe02g01228 Cpe-Chr2:11088874 7.10E-97 wgd
Cpe19g00348 Cpe-Chr19:3058720 Cpe20g00823 Cpe-Chr20:7443824 5.58E-96 wgd
Cpe19g00348 Cpe-Chr19:3058720 Cpe05g00925 Cpe-Chr5:6080077 1.09E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00348 - - csv:101212872 303.138