Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00367 ATGAGCGTGAACATAACCGCCATTAAAACCGCCTCCAACGGCGTCTGGCAAGGCGACAATCCACTCAATTTCGCCTTCCCTCTCTTGATCCTTCAATCCGTTTTGATTCTCCTCCTCACCCGCCTCCTCGCCGCCGTCCTCAAGCCCCTCCGCCAGCCCAAAGTCATCGCCGAAATCCTCGGCGGGATTCTTCTGGGTCCCTCTGTTTTTGGTCGGAATCAAGCTTATTTGAACTGGGTTTTTCCGGATTGGAGTACTCCGATTCTTGAATCGGTTGCTAGTATTGGGTTGTTGTTCTTTTTGTTTTTGGTTGGATTGGAACTCGATTTGTCCTCTGTTCGCCGTAGTGGGCGGCGGGCTTTTGGAATCGCTGTCGCTGGAATCTCCGTTCCTTTCCTCTCCGGCACCGGCGTTGCCTTTGTACTTCGGAAAACCGTCGCCGGTGCCAATAACGTCGGGTACTGGCAATTTGTTGTGTTCATCGGCGTTGCTCTGTCCATTACTGCTTTCCCTGTTCTGACGCGCATTTTAGCGGAGCTTAAGCTTCTCACCACCGAAGTCGGCGAGATTGCCATGGCGGCCGCCGCATTTAACGACATGGCTGCTTGGATTCTTCTCGCACTCGCCATTGCTCTAACGGGCAACGATAACTCTGTTACAGTACAGAGAAGTTCGTTAGTTTCCGTGTGGGTCCTACTCTCTGGAGCTGGATTTGTCGTTTTCATGATGACGGTGGTCCGACCAGGAATGAAGTGGGTTGCACGGCGGTGTTCGTACGAGGATGACGCGGTGGAGGAAGGGTATGTCTGTTTGACGTTGATCGGAGTGTTGGTTTGTGGGTTTGTGACGGATTTGATCGGAATTCATTCGATTTTTGGGGGTTTTGTGTTTGGATTGACGGTGGCGAAGGAGGGGAGATTCGCGGAGAGATTAATTGAGAGGATTGAGGATTTCGTGTCGGGGCTTCTTCTTCCTCTGTATTTTGCGTCGAGTGGGTTGAAGACGAATGTGACGAAGATCAACGGCGGAAAATCATGGGGGCTGCTGGCGCTGGTTATTTCCACGGCGTGTGCAGGGAAGATTCTGGCGACGTTTGCGGCGGCGATGGCGTTTTTAATGCCGGCGAGGGAGGCGATGGCTTTGGGATTGCTTATGAACACTAAAGGCTTGGTGGAACTCATCGTGCTCAATATTGGGAAGGAGAAAAAGGTTCTGAACGATGAAGTATTCGCGATATTAGTGTTAATGGCACTATTCACAACATTCATCACCACCCCCACCGTGATGGCAGTCTACAAGCCAGCCCGCGCTGCCGCCGCCGCCACCCGAACCCACCGCAAACTCCGCCACCTCTCGGCCGCCGGGAACTCCACCAACGACAAGTCACTAACAATCCTAGCCTGCCTCCACAGCTTAGGCAACGTACCTGCCCTAATCAGCCTGACCGAGTCAACTCGCAGCACCAAAACCTCGTCCCTCAAACTCTTCGTCATGCACCTCGTCGAACTCACCGAGCGTTCCTCCTCAATCCTAATGGCCCAACGCGCCCGCAAGAACGGCTTCCCATTCTTTGCCAGGTTCCGCAAGGCCAGCGAGTGGCACGACCAGATGGCCGCCGCCTTCCAGGCCTACAGCCAGCTGGGCCGGGTCAAGGTCCGGCCCACCACAGCGGTCTCTTCCTTGACCACAATGCACGAGGACATCTGCGGCGTGGCGGACGATAAGAGAGTGGCGATGATCATCTTGCCGTTTCATCGGAATTGGAGGACGGCCAGTGGCGTGGAGGAGAATATGGGCCATGGGTGGAGAGTTGTGAACCAGCGGGTGCTGAAGAGTGCGCCTTGCTCGGTGGCGGTTCTTGTGGACCGGGGGTTAGGAGCGGTGGTTGGTGCGGCACAGAGGATTTGTGTGATGTTTTTCGGTGGTCCTGATGACCGGGAGGCGCTGGAATTGGGTGGACGGATGGCGGAGCATCCGGCGGTGAAGGTCACGGTGGTGAGGTTTCGGGCGTCGCCGCCGTCGGATGGAGTGGAGGGTAGTAAGGTCATTTCGCGACATATGTATTCTAAATCCAGCGACAGTCATTATAGCTTCTCCACTGCTCCAATAAACTGGGAAAAAGAAAAGGAGCTAGATGAAGCAGCAATAGCAGAATTCAGAGCCAAATGGGATGCAACAGCTGAGTACACAGAAAAGGAAGCCACCGACACGAACACGATAGTTGAAGGGGTGGTCGGGATCGGAAAGGAAGGCGGTTTCGACCTAATCGTGGTCGGGAAGGGTCGGGTTCCGTCGAGCATGGTGGCAAAACTAGCAGACCGGGCGGCAGAGCAGTCGGAGTTGGGGCCGATCGGGGACATATTGAGCAGCTCCGGCAGGGGAATAGTATCTTCAATTCTAGTAATTCAACAACACCAAGAAGAAGAAACTCCAGCATTGAATAAGCAGTCTTTCTCAGTCATGGGAGCTTCCATTAATGTATAA 2484 54.11 MSVNITAIKTASNGVWQGDNPLNFAFPLLILQSVLILLLTRLLAAVLKPLRQPKVIAEILGGILLGPSVFGRNQAYLNWVFPDWSTPILESVASIGLLFFLFLVGLELDLSSVRRSGRRAFGIAVAGISVPFLSGTGVAFVLRKTVAGANNVGYWQFVVFIGVALSITAFPVLTRILAELKLLTTEVGEIAMAAAAFNDMAAWILLALAIALTGNDNSVTVQRSSLVSVWVLLSGAGFVVFMMTVVRPGMKWVARRCSYEDDAVEEGYVCLTLIGVLVCGFVTDLIGIHSIFGGFVFGLTVAKEGRFAERLIERIEDFVSGLLLPLYFASSGLKTNVTKINGGKSWGLLALVISTACAGKILATFAAAMAFLMPAREAMALGLLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARAAAAATRTHRKLRHLSAAGNSTNDKSLTILACLHSLGNVPALISLTESTRSTKTSSLKLFVMHLVELTERSSSILMAQRARKNGFPFFARFRKASEWHDQMAAAFQAYSQLGRVKVRPTTAVSSLTTMHEDICGVADDKRVAMIILPFHRNWRTASGVEENMGHGWRVVNQRVLKSAPCSVAVLVDRGLGAVVGAAQRICVMFFGGPDDREALELGGRMAEHPAVKVTVVRFRASPPSDGVEGSKVISRHMYSKSSDSHYSFSTAPINWEKEKELDEAAIAEFRAKWDATAEYTEKEATDTNTIVEGVVGIGKEGGFDLIVVGKGRVPSSMVAKLADRAAEQSELGPIGDILSSSGRGIVSSILVIQQHQEEETPALNKQSFSVMGASINV 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3325303 3329931 + Cp4.1LG19g04500.1 Cpe19g00367 485775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00367 827 Pfam Sodium/hydrogen exchanger family 35 428 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cpe19g00367 827 PANTHER CATION/H + ANTIPORTER 3 811 - -
Cpe19g00367 827 Gene3D - 481 776 - -
Cpe19g00367 827 PANTHER BNAC06G14930D PROTEIN 3 811 - -
Cpe19g00367 827 Gene3D - 28 441 IPR038770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00367 - - - csv:101207589 1196.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00481 Cpe-Chr14:3033071 Cpe19g00367 Cpe-Chr19:3325303 0 dispersed
Cpe19g00015 Cpe-Chr19:121301 Cpe19g00367 Cpe-Chr19:3325303 1.70E-124 dispersed
Cpe19g00367 Cpe-Chr19:3325303 Cpe01g01007 Cpe-Chr1:5968139 5.48E-107 dispersed
Cpe10g00875 Cpe-Chr10:4931352 Cpe19g00367 Cpe-Chr19:3325303 1.73E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g700 Blo01g01126 . Bda01g00243 . . . . . . . Cma03g00436 . Car03g00383 . Sed14g0469 . . Bhi03g01986 Tan03g0976 Cmetu08g1910 . . . . Cla04g00826 Cam04g0889 Cec04g0974 Cco04g1032 Clacu04g0882 Cmu04g0873 Cre04g0930 . Cone10ag0299 . . . Csa04g01471 Chy08g00771 . . . . . . . Bma01g01881 . . Cmo03g00449 . . . . . . Cpe19g00367 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g01060 . 10 790 Antiporter Super Family AT2G13620 71.3 0.0e+00 1113.2
Cpe16g00093 . 21 781 Antiporter Super Family AT2G13620 66.6 1.0e-303 1039.6
Cpe19g00367 . 75 807 Antiporter Super Family AT3G53720 59.3 5.7e-232 801.2
Cpe01g00640 . 839 1522 Antiporter Super Family AT3G53720 50.1 2.1e-181 633.3
Cpe10g00875 . 88 641 Antiporter Super Family AT3G53720 59.9 5.8e-176 615.1
Cpe14g00481 . 1607 2403 Antiporter Super Family AT5G41610 68.4 1.4e-305 1045.8
Cpe01g00640 . 757 1522 Antiporter Super Family AT5G41610 66.9 1.1e-294 1009.6
Cpe01g00640 . 757 1522 Antiporter Super Family AT4G23700 67.4 2.6e-291 998.4
Cpe14g00481 . 11 796 Antiporter Super Family AT4G23700 64.4 5.1e-287 984.2
Cpe01g00640 . 760 1522 Antiporter Super Family AT3G17630 64.0 2.8e-274 941.8
Cpe14g00481 . 809 1574 Antiporter Super Family AT3G17630 63.5 3.6e-269 924.9
Cpe14g00481 . 3 777 Antiporter Super Family AT1G64170 58.1 1.3e-239 826.6
Cpe01g00640 . 767 1522 Antiporter Super Family AT1G64170 57.7 9.3e-233 803.9
Cpe05g01060 . 10 790 Antiporter Super Family AT2G13620 71.3 0.0e+00 1113.2
Cpe16g00093 . 21 781 Antiporter Super Family AT2G13620 66.6 1.0e-303 1039.6
Cpe14g00481 . 3 777 Antiporter Super Family AT1G64170 58.1 1.3e-239 826.6
Cpe01g00640 . 767 1522 Antiporter Super Family AT1G64170 57.7 9.3e-233 803.9
Cpe01g00640 . 757 1522 Antiporter Super Family AT4G23700 67.4 2.6e-291 998.4
Cpe14g00481 . 11 796 Antiporter Super Family AT4G23700 64.4 5.1e-287 984.2
Cpe14g00481 . 1607 2403 Antiporter Super Family AT5G41610 68.4 1.4e-305 1045.8
Cpe01g00640 . 757 1522 Antiporter Super Family AT5G41610 66.9 1.1e-294 1009.6
Cpe01g00640 . 760 1522 Antiporter Super Family AT3G17630 64.0 2.8e-274 941.8
Cpe14g00481 . 809 1574 Antiporter Super Family AT3G17630 63.5 3.6e-269 924.9
Cpe19g00367 . 75 807 Antiporter Super Family AT3G53720 59.3 5.7e-232 801.2
Cpe01g00640 . 839 1522 Antiporter Super Family AT3G53720 50.1 2.1e-181 633.3
Cpe10g00875 . 88 641 Antiporter Super Family AT3G53720 59.9 5.8e-176 615.1
Cpe12g00834 CST 47 790 Antiporter Super Family AT3G52080 54.1 9.2e-233 803.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00367 Cpe_Chr19 FPKM 11.077065 14.530078 8.312898 10.06883 13.934193 15.00554 16.119514 7.776138 7.854101 9.893724