Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00380 ATGGGAAACGCCCATGGCCCCCGCAAGCATTTCAACCATGGGGTAAATTCCTCTCCATCTACTAACGCTCATTCTCCCTCCAATAAATATACGCCATCTGGATCAGCTCCTCCAATTTCGACCTCGACTGCCAAGATGGAGTCCTTGCCCTATGCCCTCGTTGATTCGAGTCTTCGTGCCCTTGCCGGTCAGGCTGAGGGATTTGGCCGCGCTGCCATTGGTGGTCTTCATGGTTCTGTTTATTGCGTTACTAATTTGGAAGACGATGGTCCAGGATCACTTAGGTTCGGATGTCGTATGAAAGAGCCCCTTTGGATTATCTTCGAAGTTTCGGGCACAATTCACTTGTCTTCGTATTTGAACGTGTCATCTTTTAAGACTGTAGACGGTCGTGGTCAAAGGATAAAGCTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATTATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATATTGATGGAATTCAAATTAAACCGAATTCCCGCCACATATGGATAGACCGATGCAGCCTCCAAGACTACGACGACGGGTTGATTGATATCACCCGGGGAAGTACAGATATCACTATTTCTAGGTGTCGCTTCTCACGACACGACAAAACAATGCTAATTGGAGCCGATCCCTCTCACGTTGGCGACCGATGTATCCGTGTAACTATCCACCACTGTTTTTTCGATGGTACACGTCAACGACATCCACGTGTTCGATATGGTAAAGTACATCTTTACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCAAGTGTAGAATCACAGATACACTCTCAGTGCAACATATACGAAGCGGGTCAGAAAAAGGTGGCGTTCAAATATCTAACTGAGAAGGCAACAGACAAGGAAGAGCCGTCAAGTGGGTGCATATGGTCTGAGGGAGATTTATTTGTAAGTGGCACTCAAAGTGGGCTGCTGGCTGCCAACGCCGGACAAAGCATGTTTCATCCTTCAGATCATTACACTGCTTGGACTGTGGAACCTCCCACCGATGCTCTGAAACAGATACTCCAACATTGTACTGGTTGCCAAAACATCCCTAGGCCCTGTGATCTGCCACTGGTACCTTAG 1131 47.04 MGNAHGPRKHFNHGVNSSPSTNAHSPSNKYTPSGSAPPISTSTAKMESLPYALVDSSLRALAGQAEGFGRAAIGGLHGSVYCVTNLEDDGPGSLRFGCRMKEPLWIIFEVSGTIHLSSYLNVSSFKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDIDGIQIKPNSRHIWIDRCSLQDYDDGLIDITRGSTDITISRCRFSRHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIHSQCNIYEAGQKKVAFKYLTEKATDKEEPSSGCIWSEGDLFVSGTQSGLLAANAGQSMFHPSDHYTAWTVEPPTDALKQILQHCTGCQNIPRPCDLPLVP 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3407174 3410816 - Cp4.1LG19g04320.1 Cpe19g00380 485788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00380 376 PANTHER PECTATE LYASE 43 369 - -
Cpe19g00380 376 MobiDBLite consensus disorder prediction 1 41 - -
Cpe19g00380 376 SMART amb_all 76 289 IPR002022 -
Cpe19g00380 376 PANTHER PECTATE LYASE 18-RELATED 43 369 IPR045032 GO:0030570
Cpe19g00380 376 Pfam Pectate lyase 120 281 IPR002022 -
Cpe19g00380 376 MobiDBLite consensus disorder prediction 13 41 - -
Cpe19g00380 376 Gene3D - 52 359 IPR012334 -
Cpe19g00380 376 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Cpe19g00380 376 PRINTS Pollen allergen Amb family signature 244 263 IPR018082 -
Cpe19g00380 376 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Cpe19g00380 376 SUPERFAMILY Pectin lyase-like 62 369 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00380 Cpe-Chr19:3407174 Cpe01g01256 Cpe-Chr1:7517844 3.74E-48 dispersed
Cpe10g00861 Cpe-Chr10:4867563 Cpe19g00380 Cpe-Chr19:3407174 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00380 K01728 - csv:101219724 676.396