Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00394 ATGAGTGCTAATGCCGACAGGCACAAAGTGAAAGAGTTAAGAGGACCAAATTGTAACGCACAGGATGGGAATGGAAGTGTGAACGATGGTGTGTCTGGAAGGGAACAGAGACCGGTGGAGGAAAATGAGTTGAAGGTCAATGGATTGACTAGAAATGCAGAAGATGGGCGAAATCCTACTCTTCAAGCCCAGGACATTGTACAAATACAACAGCAACAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTTCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTAGAAAACGATGACTCCACTCGCCATCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATTGCAGCTGCAAATGGACTACACGCATGGAAGGTGCTAGAAGATCTGACAAATCATATAGATCTTGTCTTAACAGAGGTGGTCATGCCTTGCTTATCGGGCATCGGTCTTTTATGCAAGATTATGAGCCATAAAACAAGGAAGAATATACCTGTGATTATGATGTCTTCTCATGACTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTCGATTTTTTAGTGAAGCCAATTCGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGTCATAGTTCTAGCGGTAGTGGAAGTGAAAGTGGCACGCAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTCAAAAATCAGACAACAACACCGGGAGCAATGAAGAAGAAGAAGACAATGAGAGCATTGGCTTCAATATTGGAGATGGAAGTGACGACGGCAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAGGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCAAAAGCGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGGTAATAACGTGCCACCTGTTTTGACAGCCGAGTGCCAGGTGCAGAAAAAGCAACTTGAAACTGTTTCCGTGGGTAGAGTTGAATTAGGCGTGCACATAAATCTAGATTTACAACTTGAACTGTCTGCGGAACATCCAACCAAGCTAGCTAACAGACAACAGAATATTATGCTTGAGATAGGATCCAATGGATTTAATGAGCAGTTCAACAAAGGACAGCTTGACCTCAACTCTGAGAATCCATCCAGCAAACTCAAGTACGAACAAACAAATGTTACTGGTCTTGCTACAAATCTTAAAGATTCTAAGTTGGATGTCACAGTGTTTGAGGCACCAACCAGCAATCCCAAGATAGACATTAAGAATAAAGATGTTACAGATTCAGGAGAATTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACGACAGGGAAAGCAGACCAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCGAACTGGGAATGCTGGAAGTAACTCTTCTCCTGTTCTTGGCTTAGAAGTTACAAACCAAGAGAACATGCAAGATATTCGATCTCTTTCGAGTGGTAATCCTCCCAATCAATGCTCAAATGGAGATAGCAATAACATTGACATGGGGTCCACTACGAATAATGCATTTTCCAAGTCCATAGTCACTAATAACAAGTCAGCAATGGCATCAACAGTCAACTGTTTGAACCCATTGGCCCAACCTATTAAGAATGACAGTCTATCTGTTCCTCAGCAAGCTGATACTACCAATAACGGTACAATTACAACAATGCAAACTCAGTCTAATTGTGTGCACGGGGAATCTCAAATTCAGCAACTTTGTCACCCGTATGATCACACTCATCTGCTTGCCCAAAATAATCAACGAATGTCATCGGAGCGTAATGACTTTTCATTAAAGAAAATATCAGCTGCGACACATTGTGGGTCATCCAATGTGTTAAATGGCCCTGTAGAAGGTAATGCAGCAAATTATAGTGTGAACGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGCAGCACTGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGCCGGAAAAGTCGAAGTGGGGATGCCAGTGGAAGTGGTAGTGGAAGTGGAAACAAAGTGGACCAAGACAGAGTCTCACAAAGGGAAGCAGCCTTGACAAAGTTTCGCCAGAAACGGAAGGAAAGATGCTTCCATAAAAAGGTCCGATACCAAGGCAGAAAGAAATTGGCAGAACAGAGGCCCCGTGTGAGGGGACAGTTCGTGAGACAAAACACAAGCGAAAACACGAGCAATGTCGGAGATGGCTAA 2346 43.31 MSANADRHKVKELRGPNCNAQDGNGSVNDGVSGREQRPVEENELKVNGLTRNAEDGRNPTLQAQDIVQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKVLEDLTNHIDLVLTEVVMPCLSGIGLLCKIMSHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVQKSDNNTGSNEEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDQKRERPDSTCAQVVHSNADAFGNNVPPVLTAECQVQKKQLETVSVGRVELGVHINLDLQLELSAEHPTKLANRQQNIMLEIGSNGFNEQFNKGQLDLNSENPSSKLKYEQTNVTGLATNLKDSKLDVTVFEAPTSNPKIDIKNKDVTDSGEFPSLELGLKRLRGVQTTGKADQDERNVLRRSDSSAFSRYNAGSNSNKTRTGNAGSNSSPVLGLEVTNQENMQDIRSLSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSIVTNNKSAMASTVNCLNPLAQPIKNDSLSVPQQADTTNNGTITTMQTQSNCVHGESQIQQLCHPYDHTHLLAQNNQRMSSERNDFSLKKISAATHCGSSNVLNGPVEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGRKSRSGDASGSGSGSGNKVDQDRVSQREAALTKFRQKRKERCFHKKVRYQGRKKLAEQRPRVRGQFVRQNTSENTSNVGDG 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3519895 3528158 - Cp4.1LG19g04160.1 Cpe19g00394 485802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00394 781 MobiDBLite consensus disorder prediction 1 57 - -
Cpe19g00394 781 MobiDBLite consensus disorder prediction 263 278 - -
Cpe19g00394 781 MobiDBLite consensus disorder prediction 721 736 - -
Cpe19g00394 781 MobiDBLite consensus disorder prediction 737 752 - -
Cpe19g00394 781 Gene3D - 90 261 - -
Cpe19g00394 781 MobiDBLite consensus disorder prediction 698 720 - -
Cpe19g00394 781 MobiDBLite consensus disorder prediction 473 504 - -
Cpe19g00394 781 CDD psREC_PRR 93 196 - -
Cpe19g00394 781 MobiDBLite consensus disorder prediction 215 300 - -
Cpe19g00394 781 Pfam Response regulator receiver domain 93 204 IPR001789 GO:0000160
Cpe19g00394 781 MobiDBLite consensus disorder prediction 764 781 - -
Cpe19g00394 781 MobiDBLite consensus disorder prediction 665 781 - -
Cpe19g00394 781 Pfam CCT motif 727 769 IPR010402 GO:0005515
Cpe19g00394 781 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 757 IPR045279 GO:0009736
Cpe19g00394 781 MobiDBLite consensus disorder prediction 215 242 - -
Cpe19g00394 781 MobiDBLite consensus disorder prediction 1 15 - -
Cpe19g00394 781 MobiDBLite consensus disorder prediction 475 504 - -
Cpe19g00394 781 ProSiteProfiles CCT domain profile. 727 769 IPR010402 GO:0005515
Cpe19g00394 781 ProSiteProfiles Response regulatory domain profile. 92 210 IPR001789 GO:0000160
Cpe19g00394 781 MobiDBLite consensus disorder prediction 34 50 - -
Cpe19g00394 781 SMART REC_2 91 206 IPR001789 GO:0000160
Cpe19g00394 781 MobiDBLite consensus disorder prediction 665 691 - -
Cpe19g00394 781 SUPERFAMILY CheY-like 89 215 IPR011006 -
Cpe19g00394 781 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 28 757 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00576 Cpe-Chr5:3487535 Cpe19g00394 Cpe-Chr19:3519895 3.78E-18 dispersed
Cpe13g00339 Cpe-Chr13:3053370 Cpe19g00394 Cpe-Chr19:3519895 2.95E-17 dispersed
Cpe19g00394 Cpe-Chr19:3519895 Cpe20g00010 Cpe-Chr20:65704 1.54E-17 dispersed
Cpe19g00394 Cpe-Chr19:3519895 Cpe03g01835 Cpe-Chr3:13677288 3.98E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50973 PF00072 Response_reg 4.20E-20 CL0304 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00394 K12129 - csv:101210765 1221.45