Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00398 ATGTTGGATCTCAATCTCTGTATTCTCTCCGGAGATTCCGCCTCCGGTTCCGGTTCTGGTTCCGGTTCCGCCGATCATTCCAACACCACCGCCGACGAGGATTTCTCTTCCAACGTTAACTCTGGTTTCACTTTCTCTTTCAGTATCCTCAACAACAACGGCACCGAAAATCAACTTGACCGGACGGCCCTGTTTCACCCCGTCGCCGGCGTCTGTTCGCAGAGGAAATGGCTGGATCAGTCTGTTAATCCGGTGAAGAAAGGCCGGCGAGGCCCCAAATCAAGAAGCTCGCAGTATCGTGGGGTTACTTGTTATCGAAGAACAGGGAGATGGGAGTCGCATATCTGGTTAGTAATCAATCAACAATTACTCTGTTTTAGCTATCCATTTTCAAATCCTCTGTTTTCTGGGTATGAGGCTCATGATCAATCAATTCTTTCTGTTCACAGGGATAACGGGAAGCAAGTCTATTTGGGCGGTTTTGACACGGCCCATTCTGCAGCGAGGGCTTACGATCGAGCGGCAATCAAGTTTCGAGGAGTTCATGCGGATATTAACTTCGATATCGGCGACTACAGAGAGGAGATTAAAGAGATGAGGAATCTGAGTAAAGAGGAGTTTGTGCACATTCTTCGACGGCAGAGCAATGGATTTTCGAGAGGGAGTTCCAAATACAGAGGGGTTACTCTGCATAAGTGTGGCCGATGGGAGGCTCGTATGGGCCAGTTTTTAGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGGTAGAAGCAGCAAGAGCATATGATAAGGCAGCCATAAAACACAACGGAAGGGAAGCTGTAACCAATTTTGATCAGAGCTGTTATTATGGCATGGAGATTGCCTTTGAATCTGAAAGCCATGGCGATATTGACCTGAGCTTGGGCATTGCTCCTCCATGTCCACCCGAACACCAAACCGATAACCGGAGTTGGCCGATCCCAACCCCCTACGGCGGAGCGTCCTCACTCCCGTTCTTCTCCGCCCCAGCAGCATCATCAGGATTCCCTTCTTCTCCCGCCCTTCCTCCGCCCTCGCCTCACCGCCTTCTTCCACCCTCACCTTTCCTCCGCTACCACATTCCCCCCTCTATTCCCGCTGCCAGTAACAGTCTATTATTATGA 1152 50.0 MLDLNLCILSGDSASGSGSGSGSADHSNTTADEDFSSNVNSGFTFSFSILNNNGTENQLDRTALFHPVAGVCSQRKWLDQSVNPVKKGRRGPKSRSSQYRGVTCYRRTGRWESHIWLVINQQLLCFSYPFSNPLFSGYEAHDQSILSVHRDNGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFDIGDYREEIKEMRNLSKEEFVHILRRQSNGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEVEAARAYDKAAIKHNGREAVTNFDQSCYYGMEIAFESESHGDIDLSLGIAPPCPPEHQTDNRSWPIPTPYGGASSLPFFSAPAASSGFPSSPALPPPSPHRLLPPSPFLRYHIPPSIPAASNSLLL 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3551661 3554900 + Cp4.1LG19g04240.1 Cpe19g00398 485806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00398 383 CDD AP2 97 189 IPR001471 GO:0003700|GO:0006355
Cpe19g00398 383 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 315 - -
Cpe19g00398 383 MobiDBLite consensus disorder prediction 13 32 - -
Cpe19g00398 383 SMART rav1_2 98 194 IPR001471 GO:0003700|GO:0006355
Cpe19g00398 383 SMART rav1_2 224 287 IPR001471 GO:0003700|GO:0006355
Cpe19g00398 383 ProSiteProfiles AP2/ERF domain profile. 98 188 IPR001471 GO:0003700|GO:0006355
Cpe19g00398 383 CDD AP2 223 283 IPR001471 GO:0003700|GO:0006355
Cpe19g00398 383 PRINTS Ethylene responsive element binding protein signature 263 283 IPR001471 GO:0003700|GO:0006355
Cpe19g00398 383 PRINTS Ethylene responsive element binding protein signature 225 236 IPR001471 GO:0003700|GO:0006355
Cpe19g00398 383 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 315 - -
Cpe19g00398 383 Gene3D AP2/ERF domain 97 189 IPR036955 GO:0003700|GO:0006355
Cpe19g00398 383 Gene3D AP2/ERF domain 223 282 IPR036955 GO:0003700|GO:0006355
Cpe19g00398 383 SUPERFAMILY DNA-binding domain 223 282 IPR016177 GO:0003677
Cpe19g00398 383 Pfam AP2 domain 223 271 IPR001471 GO:0003700|GO:0006355
Cpe19g00398 383 SUPERFAMILY DNA-binding domain 150 189 IPR016177 GO:0003677
Cpe19g00398 383 ProSiteProfiles AP2/ERF domain profile. 224 281 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00398 Cpe-Chr19:3551661 Cpe19g00630 Cpe-Chr19:5121137 2.25E-63 dispersed
Cpe01g00229 Cpe-Chr1:1301560 Cpe19g00398 Cpe-Chr19:3551661 3.50E-09 wgd
Cpe01g01135 Cpe-Chr1:6736665 Cpe19g00398 Cpe-Chr19:3551661 1.25E-09 wgd
Cpe16g00565 Cpe-Chr16:6443669 Cpe19g00398 Cpe-Chr19:3551661 3.15E-97 wgd
Cpe19g00398 Cpe-Chr19:3551661 Cpe03g00153 Cpe-Chr3:770883 9.56E-86 wgd
Cpe19g00398 Cpe-Chr19:3551661 Cpe05g00875 Cpe-Chr5:5758181 9.14E-98 wgd
Cpe19g00398 Cpe-Chr19:3551661 Cpe08g01126 Cpe-Chr8:8455417 2.49E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50974 PF00847 AP2 1.80E-09 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00398 K09284 - csv:101211008 398.667