Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00403 ATGTCTGAACAAAGCTCTCAACTTTATCATCTTCCTCATAACCCTAACCCTAACCCTAACCCTAACCCTAAAAAGAAGAGAAATTTTCCAGGAAAACCAGATCCAGATGCCGAGGTGATTGCTTTATCGCCGAACGCTCTAATGGCGACGAACCGATTCATATGTGAGATATGCAACAAAGGGTTTCAAAGGGATCAGAACTTGCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTTAGGCAGAGAAGCAACAAAGAGGTGAAGAAGAAGGTTTATATTTGCCCAGAGAAGTCTTGTGTTCATCATGATCCAGCTAGAGCACTTGGAGACCTGACTGGAATCAAGAAGCATTTTAGTAGAAAACATGGTGAGAAGAAATGGAAATGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCGGATTGGAAAGCTCATTCTAAAACTTGTGGAACTCGAGAGTACAAATGTGACTGTGGAACACTCTTTTCCAGGAAAGACAGCTTCATAACCCACCGAGCATTCTGCGACGCTCTAGCAGACGAAAGCGGCAGGCTAATCTCATCGGTAGCAGCAAATTCAACCCCAAATTTCATTGCCAATTCACTCAACGAATCTCTCTTCAATTCCCAAGGCGGAATCTTTGTCCAATCACACCATAATAACTTCCCCATCAACAACACCTTCCCTTTCCCCCAAATTCCACCCTCTAATCTCTTCCAAACCTCCAACCCAATTCTGGGTTTGAATAAAAACTCTTCAAAAACGGCTGTAAACCTCTCGTCGTTTTGCTCGAGCGGTAGCGTCGGTGGAGGGAAGTCGATTATGCCGATGTCGGCTACGGCATTGCTGCTGAAGGCAGCACATTTCGGGTCTACGAAAAGTAATCCGTCGTTCTCCGGGAATAGTGTGGGAGTTATGAGTTCGTCTTCGAGTTCGTTTGATCAGAGCAAAGGGGAGTTGCAGCGAATAGGCTCCCATGGCGGAAGTGGGAGCGGGTTGAGGGATTTTTTGGGTACGAGGGAGAGAGAAGGGAATGGGAATGTGGAGTTGGTTTCGTTACTGGAGATGTCGAAATTTGGGAGCTCTATGAGCTCGGAGATGGGGTTGAGCGAGTTCATTGGGAATGCTCGGGGATGA 1143 46.02 MSEQSSQLYHLPHNPNPNPNPNPKKKRNFPGKPDPDAEVIALSPNALMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKKVYICPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALADESGRLISSVAANSTPNFIANSLNESLFNSQGGIFVQSHHNNFPINNTFPFPQIPPSNLFQTSNPILGLNKNSSKTAVNLSSFCSSGSVGGGKSIMPMSATALLLKAAHFGSTKSNPSFSGNSVGVMSSSSSSFDQSKGELQRIGSHGGSGSGLRDFLGTREREGNGNVELVSLLEMSKFGSSMSSEMGLSEFIGNARG 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3582056 3585156 + Cp4.1LG19g04080.1 Cpe19g00403 485811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00403 380 Gene3D Classic Zinc Finger 107 184 - -
Cpe19g00403 380 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 14 313 - -
Cpe19g00403 380 MobiDBLite consensus disorder prediction 1 36 - -
Cpe19g00403 380 Pfam Zinc-finger double-stranded RNA-binding 53 75 IPR022755 -
Cpe19g00403 380 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Cpe19g00403 380 MobiDBLite consensus disorder prediction 311 342 - -
Cpe19g00403 380 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 313 - -
Cpe19g00403 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Cpe19g00403 380 Gene3D Classic Zinc Finger 36 105 - -
Cpe19g00403 380 SMART c2h2final6 53 75 IPR013087 -
Cpe19g00403 380 SMART c2h2final6 94 124 IPR013087 -
Cpe19g00403 380 SMART c2h2final6 129 149 IPR013087 -
Cpe19g00403 380 SUPERFAMILY beta-beta-alpha zinc fingers 52 149 IPR036236 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g01104 Cpe19g00403 CCT
Cpe08g01104 Cpe19g00403 ECH
Cpe03g00175 Cpe19g00403 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00403 Cpe-Chr19:3582056 Cpe10g00600 Cpe-Chr10:3504977 2.19E-113 dispersed
Cpe19g00403 Cpe-Chr19:3582056 Cpe20g00766 Cpe-Chr20:6826444 1.13E-107 wgd
Cpe19g00403 Cpe-Chr19:3582056 Cpe03g00175 Cpe-Chr3:867681 5.02E-121 wgd
Cpe19g00403 Cpe-Chr19:3582056 Cpe08g01104 Cpe-Chr8:8347530 1.18E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50976 PF12171 zf-C2H2_jaz 5.20E-05 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00403 K25870 - csv:101221389 414.846