Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe19g00403 | ATGTCTGAACAAAGCTCTCAACTTTATCATCTTCCTCATAACCCTAACCCTAACCCTAACCCTAACCCTAAAAAGAAGAGAAATTTTCCAGGAAAACCAGATCCAGATGCCGAGGTGATTGCTTTATCGCCGAACGCTCTAATGGCGACGAACCGATTCATATGTGAGATATGCAACAAAGGGTTTCAAAGGGATCAGAACTTGCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTTAGGCAGAGAAGCAACAAAGAGGTGAAGAAGAAGGTTTATATTTGCCCAGAGAAGTCTTGTGTTCATCATGATCCAGCTAGAGCACTTGGAGACCTGACTGGAATCAAGAAGCATTTTAGTAGAAAACATGGTGAGAAGAAATGGAAATGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCGGATTGGAAAGCTCATTCTAAAACTTGTGGAACTCGAGAGTACAAATGTGACTGTGGAACACTCTTTTCCAGGAAAGACAGCTTCATAACCCACCGAGCATTCTGCGACGCTCTAGCAGACGAAAGCGGCAGGCTAATCTCATCGGTAGCAGCAAATTCAACCCCAAATTTCATTGCCAATTCACTCAACGAATCTCTCTTCAATTCCCAAGGCGGAATCTTTGTCCAATCACACCATAATAACTTCCCCATCAACAACACCTTCCCTTTCCCCCAAATTCCACCCTCTAATCTCTTCCAAACCTCCAACCCAATTCTGGGTTTGAATAAAAACTCTTCAAAAACGGCTGTAAACCTCTCGTCGTTTTGCTCGAGCGGTAGCGTCGGTGGAGGGAAGTCGATTATGCCGATGTCGGCTACGGCATTGCTGCTGAAGGCAGCACATTTCGGGTCTACGAAAAGTAATCCGTCGTTCTCCGGGAATAGTGTGGGAGTTATGAGTTCGTCTTCGAGTTCGTTTGATCAGAGCAAAGGGGAGTTGCAGCGAATAGGCTCCCATGGCGGAAGTGGGAGCGGGTTGAGGGATTTTTTGGGTACGAGGGAGAGAGAAGGGAATGGGAATGTGGAGTTGGTTTCGTTACTGGAGATGTCGAAATTTGGGAGCTCTATGAGCTCGGAGATGGGGTTGAGCGAGTTCATTGGGAATGCTCGGGGATGA | 1143 | 46.02 | MSEQSSQLYHLPHNPNPNPNPNPKKKRNFPGKPDPDAEVIALSPNALMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKKVYICPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALADESGRLISSVAANSTPNFIANSLNESLFNSQGGIFVQSHHNNFPINNTFPFPQIPPSNLFQTSNPILGLNKNSSKTAVNLSSFCSSGSVGGGKSIMPMSATALLLKAAHFGSTKSNPSFSGNSVGVMSSSSSSFDQSKGELQRIGSHGGSGSGLRDFLGTREREGNGNVELVSLLEMSKFGSSMSSEMGLSEFIGNARG | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 3582056 | 3585156 | + | Cp4.1LG19g04080.1 | Cpe19g00403 | 485811 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe19g00403 | 380 | Gene3D | Classic Zinc Finger | 107 | 184 | - | - | |
Cpe19g00403 | 380 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 14 | 313 | - | - | |
Cpe19g00403 | 380 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Cpe19g00403 | 380 | Pfam | Zinc-finger double-stranded RNA-binding | 53 | 75 | IPR022755 | - | |
Cpe19g00403 | 380 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 55 | 75 | IPR013087 | - | |
Cpe19g00403 | 380 | MobiDBLite | consensus disorder prediction | 311 | 342 | - | - | |
Cpe19g00403 | 380 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 14 | 313 | - | - | |
Cpe19g00403 | 380 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 53 | 75 | IPR013087 | - | |
Cpe19g00403 | 380 | Gene3D | Classic Zinc Finger | 36 | 105 | - | - | |
Cpe19g00403 | 380 | SMART | c2h2final6 | 53 | 75 | IPR013087 | - | |
Cpe19g00403 | 380 | SMART | c2h2final6 | 94 | 124 | IPR013087 | - | |
Cpe19g00403 | 380 | SMART | c2h2final6 | 129 | 149 | IPR013087 | - | |
Cpe19g00403 | 380 | SUPERFAMILY | beta-beta-alpha zinc fingers | 52 | 149 | IPR036236 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe08g01104 | Cpe19g00403 | CCT | |
Cpe08g01104 | Cpe19g00403 | ECH | |
Cpe03g00175 | Cpe19g00403 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe19g00403 | Cpe-Chr19:3582056 | Cpe10g00600 | Cpe-Chr10:3504977 | 2.19E-113 | dispersed | |
Cpe19g00403 | Cpe-Chr19:3582056 | Cpe20g00766 | Cpe-Chr20:6826444 | 1.13E-107 | wgd | |
Cpe19g00403 | Cpe-Chr19:3582056 | Cpe03g00175 | Cpe-Chr3:867681 | 5.02E-121 | wgd | |
Cpe19g00403 | Cpe-Chr19:3582056 | Cpe08g01104 | Cpe-Chr8:8347530 | 1.18E-117 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50976 | PF12171 | zf-C2H2_jaz | 5.20E-05 | CL0361 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe19g00403 | K25870 | - | csv:101221389 | 414.846 |