Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00409 ATGGCCAAGGATTCTGAAGCTGGTGGATTCGCCGCCAAGGACTACCACGACCCACCTCCGGCGCCGTTGATCGACGTCGAGGAGTTCACTCAGTGGTCATTTTACAGAGCCATCATTGCCGAGTTCATCGCCACGCTTCTGTTCTTGTACGTTACTGTTCTCACTGTCATTGGCTACAGCAGCCAGTCCGACGTCGACCACGGGGGCCATATCTGCGGCGGGGTCGGCATTCTCGGCATCGCTTGGGCCTTTGGTGGAATGATCTTCGTTCTTGTTTACTGCACCGCTGGGATTTCCGGTGGGCATATCAATCCAGCGGTGACATTTGGGTTGCTTTTGGCACGGAAAGTGTCGTTGGTGAGGGCCGTTTTGTATATGGTGGCTCAGTGTGTTGGAGCCATTTGTGGATGTGCGTTGGTCAAATCGTTTCAGAAGGGTCTCTACAATCGCTACGGCGGTGGAGCCAATTCGCTAGCTGAAGGTTACAGCACCGGCACCGGCTTGGCCGCTGAGATTATCGGAACCTTCGTTCTTGTCTACACTGTCTTCTCTGCTACAGATCCCAAGAGAAGCGCAAGAGATTCTCACATTCCTGTACTAGCACCACTCCCAATTGGGTTCGCCGTGTTCATGGTTCACCTGGCCACCATTCCGATCACCGGCACCGGTATTAACCCAGCTCGAAGCTTCGGCGCTGCGGTGGTGTTCAACCACAGCAAGCCCTGGAATGACCATTGGATTTTCTGGGTTGGACCCTTCATTGGAGCTCTCATTGCTGCGTTTTATCACCAGTTCATATTGAGAGCTGGAGCAGTTAAAGCTCTGGGATCCTTCAGGAGTACCCACAGCGTCTAA 855 53.57 MAKDSEAGGFAAKDYHDPPPAPLIDVEEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYSSQSDVDHGGHICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVLYMVAQCVGAICGCALVKSFQKGLYNRYGGGANSLAEGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNHSKPWNDHWIFWVGPFIGALIAAFYHQFILRAGAVKALGSFRSTHSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3617325 3619581 - Cp4.1LG19g04020.1 Cpe19g00409 485817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00409 284 PANTHER AQUAPORIN PIP2-4-RELATED 6 281 - -
Cpe19g00409 284 CDD MIP 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00409 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Cpe19g00409 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Cpe19g00409 284 TIGRFAM MIP: MIP family channel proteins 40 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00409 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 281 IPR034294 -
Cpe19g00409 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00409 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00409 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00409 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00409 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00409 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00409 284 Pfam Major intrinsic protein 29 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00409 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01236 Cpe-Chr1:7408243 Cpe19g00409 Cpe-Chr19:3617325 7.01E-149 dispersed
Cpe04g00598 Cpe-Chr4:6291765 Cpe19g00409 Cpe-Chr19:3617325 1.35E-156 dispersed
Cpe10g00214 Cpe-Chr10:1222454 Cpe19g00409 Cpe-Chr19:3617325 7.11E-57 dispersed
Cpe10g00215 Cpe-Chr10:1222911 Cpe19g00409 Cpe-Chr19:3617325 1.46E-39 dispersed
Cpe10g00216 Cpe-Chr10:1223766 Cpe19g00409 Cpe-Chr19:3617325 3.75E-152 dispersed
Cpe15g00598 Cpe-Chr15:6724194 Cpe19g00409 Cpe-Chr19:3617325 1.42E-157 dispersed
Cpe19g00409 Cpe-Chr19:3617325 Cpe19g00410 Cpe-Chr19:3623233 1.95E-164 tandem
Cpe01g02241 Cpe-Chr1:19049402 Cpe19g00409 Cpe-Chr19:3617325 2.42E-173 wgd
Cpe13g00804 Cpe-Chr13:7202436 Cpe19g00409 Cpe-Chr19:3617325 2.89E-19 wgd
Cpe16g00536 Cpe-Chr16:6270595 Cpe19g00409 Cpe-Chr19:3617325 1.95E-167 wgd
Cpe19g00409 Cpe-Chr19:3617325 Cpe08g01099 Cpe-Chr8:8324588 5.17E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00409 K09872 - csv:101214884 539.265