Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00410 ATGTCGGCCGCCAAGGACTACCAAGACCCGCCTCCGACCCCATTGATCGACGTTGAGGAGTTTACTCAGTGGTCATTTTACAGAGCCATTATCGCTGAGTTCGTCGCCACGCTTCTGTTCTTGTACATTCTTGTTCTCACTGTGATTGGATCTTCCAAGTTGTTGGACACTGAAAGCCCCTGCGGTGGGGTTGGCGTTTTGGGTATTGCCTGGGCTGTCGGTGGCATGATCTTCGTCCTTGTTTACTGTACCGCTGGAATTTCTGGAGGGCATATTAACCCGGCCGTGACGTTCGGGCTGTTATTGGCTCGAAAAATCTCTCTAATCAGAGCTGTTCTTTACATTATGGCTCAATGTTTGGGGGCCATTTGTGGGTGTGGGTTAGCTAAATCGTTTCAGAAGGGTTATTACGTTCGGTACAAAGGTGGAGCCAATATGCTCTCCGATGAGTACAGCATCGGCACCGGCTTAGCCGCAGAAATCATCGGAACTTTTGTTCTTGTTTACACTGTCTTCTCCGCCACTGACCCCAAGAGAAACGCTAGAGATTCTCACGTCCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCAGTGTTTATGGTTCATTTAGCCACCATTCCGATCACCGGCACCGGCATAAACCCAGCTCGAAGCTTAGGAGCTGCAGTGATCTATAACGAAGCTGAAGCCTGGGATCACCATTGGATCTTTTGGGTTGGGCCCTTCATTGGAGCTGCCATTGCTGCCATTTATCATCAAGTCATAATAAGAGCAGGGGCAGTCAAAGCACTGGGCTCGTTCAGAAGTTCCTCCGCCGTATAA 822 50.12 MSAAKDYQDPPPTPLIDVEEFTQWSFYRAIIAEFVATLLFLYILVLTVIGSSKLLDTESPCGGVGVLGIAWAVGGMIFVLVYCTAGISGGHINPAVTFGLLLARKISLIRAVLYIMAQCLGAICGCGLAKSFQKGYYVRYKGGANMLSDEYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNEAEAWDHHWIFWVGPFIGAAIAAIYHQVIIRAGAVKALGSFRSSSAV 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3623233 3627026 + Cp4.1LG19g04100.1 Cpe19g00410 485818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00410 273 SUPERFAMILY Aquaporin-like 20 257 IPR023271 -
Cpe19g00410 273 ProSitePatterns MIP family signature. 91 99 IPR022357 -
Cpe19g00410 273 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 270 IPR034294 -
Cpe19g00410 273 PRINTS Major intrinsic protein family signature 28 47 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00410 273 PRINTS Major intrinsic protein family signature 73 97 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00410 273 PRINTS Major intrinsic protein family signature 110 129 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00410 273 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00410 273 PRINTS Major intrinsic protein family signature 195 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00410 273 PRINTS Major intrinsic protein family signature 235 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00410 273 CDD MIP 28 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00410 273 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 25 3 270 - -
Cpe19g00410 273 TIGRFAM MIP: MIP family channel proteins 32 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00410 273 Pfam Major intrinsic protein 21 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00410 273 Gene3D Glycerol uptake facilitator protein. 13 273 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00216 Cpe19g00410 CCT
Cpe08g01099 Cpe19g00410 CCT
Cpe10g00216 Cpe19g00410 ECH
Cpe08g01099 Cpe19g00410 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00536 Cpe-Chr16:6270595 Cpe19g00410 Cpe-Chr19:3623233 1.70E-162 dispersed
Cpe19g00410 Cpe-Chr19:3623233 Cpe09g00420 Cpe-Chr9:2660647 3.69E-140 dispersed
Cpe19g00409 Cpe-Chr19:3617325 Cpe19g00410 Cpe-Chr19:3623233 1.95E-164 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00410 K09872 - csv:101215604 476.863