Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00413 ATGATTACGTTTATGGATTCGAAAGAGAAAGTGAAAGAGATGGAGAAATGCTTAGATCCTCAGCTATGGCATGCTTGTGCTGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGGGTTTTCTATTTTCCTCAAGGCCATGCCGAGCATGCTTGTGCGCCAGTTGATTTCAGGAACTGTTCTAAGGTTCCTCCATATACGCTTTGTAGAGTTTCTGCTATCAAGTTCCTTGCCGATCCTGACACGGATGAGGTCTTTGCTAAACTCAGGTTGATTCCCATTAATGGAAGTGAACTAGAGTTTGAAGATGATGGAATTGGAAGGCTTAATGGGTCTGAACAGGATAAGCCAACTTCGTTTGCAAAGACATTGACTCAATCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCAAGGTATTGTGCTGAAACCATCTTCCCTCGGTTGGATTACTCGGCCGATCCACCGGTTCAGACAATTCTTGCTAAGGATGTTCATGGGGAGACATGGAAATTCAGACACATTTACCGTGGGACGCCTCGGCGACATCTTTTAACGACGGGATGGAGTACGTTTGTTAACCATAAGAAGCTTGTGGCTGGTGATTCCATTGTGTTCTTGAGGGCTGAAAATGGAGATCTCTGCGTCGGGATTAGACGAGCGAAGAGAGGAATTGGAGATGGGCCGGAACCGCCGTGTGGATGGAATCCAGCAGGTGGGAACTGTGCTGTGCCTTATGGAGCTTTCTCAACGTTCTTGAGGGAAGATGAAAACAGAGTGAACAGGACTAATGGAAAAGGGAAAGTGAAGGCTGAATCAGTCATTGAAGCTGCTACACTTGCTGCAAATGGGCAGCCCTTTGAAATAGTATACTATCCAAGAGCTAGTACTCCTGAGTTCTGTGTCAAGGCAGGGCTGGTGAAAGCAGCATTGCAGATCCGGTGGTGCTCGGGTATGCGGTTCAAGATGGCGTTCGAAACCGAGGACTCTTTGCGGATAAGCTGGTTCATGGGTACCATAAACACCGTTCAGGCCGCCGACCCACTGCGCTGGCCTGAATCACCATGGAGGCTTCTACAGGTTACTTGGGACGAGCCCGATTTACTTCAGAATGTGAAACGTGTTAGCCCGTGGTTGGTCGAATTGGTATCGAACATATCTCCGATTCATCTTGCCCCGTTCTCACCTCCAAGGAAAAAGTTCAGATATCCACAACACCCTGATTTCCCCCACGATAACCAGCCTTCTATGTCGCCGTTCGCGAGTTATCTCCATGGTCCAGGCAGCCCCTTCGGTTGTCCTCCGGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCGGATTTTCATCTCAGTAAACTGCAGTCGGGTCTGTTTCCGATTCGTTATCGATCATTGGATCCAGCTGCTGGATCAACTAGACTTTCTGGTAATGCAATGACTGAAAAGCCAAGTATGAGTGAAAATGTATCTTGCTTGCTAACCATGGCGCATTCTACTCAAACGTCGAAGAAATTCGACAACGTAAAGACTCCACAGCTAATACTTTTCGGCAGACCCATACTAACCGAATTGCAGATGTCTCAAAGCTGTTCTGGTGATACCGTTTCTCCAGTTGGTACTGGAAACAGTTCGTCGGATGGAAACGGTTCTGGATCTGCACTACATCAACAAGGACTACCAGAACGCTCGTCTTGCGAAAATTTCCAATGGTACAAGGACAATCGCCAAGATGTCGAGCCTAACTTGGATACTGGCCACTGTAAAGTCTTCATGGAATCAGAAGACGTCGGTCGCACCCTCGATCTTTCTTCACTTGGGTCCTATGAAGAATTGTACAGAAAACTCGGAAACATGTTCGGCATCGATAACTCAGAGATGTTGAACCATGTCTTGTACCGGGATATCTCCGGTGCTGTCAAGCACGTCGGCGACGAACAATTCAGCGAGTTCATGAAGACAGCAAGAAGATTGACAATTCTAACAGATTCAGGAAGTAACAATGTGATTTTAGTTCTTAATGTTAATGGAAGTGGTTTCAAATTTAAAGAAGTATCTCGAGACACGAGCAGGCCGCTACAGTGTGATGTTTAG 2118 47.17 MITFMDSKEKVKEMEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHACAPVDFRNCSKVPPYTLCRVSAIKFLADPDTDEVFAKLRLIPINGSELEFEDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPEPPCGWNPAGGNCAVPYGAFSTFLREDENRVNRTNGKGKVKAESVIEAATLAANGQPFEIVYYPRASTPEFCVKAGLVKAALQIRWCSGMRFKMAFETEDSLRISWFMGTINTVQAADPLRWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNISPIHLAPFSPPRKKFRYPQHPDFPHDNQPSMSPFASYLHGPGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFPIRYRSLDPAAGSTRLSGNAMTEKPSMSENVSCLLTMAHSTQTSKKFDNVKTPQLILFGRPILTELQMSQSCSGDTVSPVGTGNSSSDGNGSGSALHQQGLPERSSCENFQWYKDNRQDVEPNLDTGHCKVFMESEDVGRTLDLSSLGSYEELYRKLGNMFGIDNSEMLNHVLYRDISGAVKHVGDEQFSEFMKTARRLTILTDSGSNNVILVLNVNGSGFKFKEVSRDTSRPLQCDV 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3647403 3650436 - Cp4.1LG19g04050.1 Cpe19g00413 485821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00413 705 Gene3D - 118 222 IPR015300 -
Cpe19g00413 705 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Cpe19g00413 705 ProSiteProfiles PB1 domain profile. 593 673 IPR000270 GO:0005515
Cpe19g00413 705 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Cpe19g00413 705 Gene3D - 314 388 - -
Cpe19g00413 705 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe19g00413 705 Gene3D - 591 677 - -
Cpe19g00413 705 MobiDBLite consensus disorder prediction 536 569 - -
Cpe19g00413 705 CDD B3_DNA 119 220 IPR003340 GO:0003677
Cpe19g00413 705 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe19g00413 705 SUPERFAMILY DNA-binding pseudobarrel domain 114 224 IPR015300 -
Cpe19g00413 705 SMART B3_2 120 222 IPR003340 GO:0003677
Cpe19g00413 705 PANTHER AUXIN RESPONSE FACTOR 6 670 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00219 Cpe19g00413 CCT
Cpe10g00219 Cpe19g00413 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00816 Cpe-Chr5:5047352 Cpe19g00413 Cpe-Chr19:3647403 0 dispersed
Cpe07g00118 Cpe-Chr7:659616 Cpe19g00413 Cpe-Chr19:3647403 6.65E-110 dispersed
Cpe19g00413 Cpe-Chr19:3647403 Cpe11g00650 Cpe-Chr11:4296398 1.57E-82 dispersed
Cpe01g02236 Cpe-Chr1:19019574 Cpe19g00413 Cpe-Chr19:3647403 0 wgd
Cpe10g00219 Cpe-Chr10:1241922 Cpe19g00413 Cpe-Chr19:3647403 0 wgd
Cpe13g00800 Cpe-Chr13:7188933 Cpe19g00413 Cpe-Chr19:3647403 0 wgd
Cpe16g00530 Cpe-Chr16:6226242 Cpe19g00413 Cpe-Chr19:3647403 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50977 PF02362 B3 1.60E-21 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00413 - - csv:101217039 1264.6