Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00431 CTTTGCTGCTACACTCCCCCTCGCCGCCATGCACCGCTCTCAACCTCAGTCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGCTTTGCTGCTACACTCCCCCTCGCCGCCATGCACCGCTCTCAACCTCAGTCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTGAATGATTCCATAACAAGAAGGCGACTGATCCAAAACTCAGAGAACGACGAATCTTCTTCCTGCTACACCGGAAACCCCATCGACGACTGCTGGAAATGCGATTCAAATTGGCCAAACAACCGCCAACGCCTCGCCGATTGCGCCATAGGATTTGGCCAGTACGCTTCAGGAGGGAAGAACGGTGAGTTCTACGTCGTCACAGATGACTCCGACGATGATCCAGTCAATCCAGAGCCCGGGACATTACGATACGCCGTTATACAGCCACAGCCTCTCTGGATCGTCTTCCCCGCCAATATGCTCATCAAACTCTCACAGGAACTCATCTTTAACAGCTACAAAACCCTAGACGGCCGGGGCGCCAACGTCCACATCGTCGGCGGCGGTTGCATCACCTTGCAATACATAAGTAACGTCATTATCCACAATATCCACATCCACCATTGTTATCCATCAGGGAACACCATGGTCCGATCAAGTCCGACGCATTACGGATACCGTACGAAATCGGACGGCGACGGGATCTCGATCTTCGGGTCTAAGGACATATGGATTGACCATTGTTCGCTCTCGCATTGCAAGGATGGGCTGATTGATGCGGTGATGGGCTCCACCGGAATCACGATTTCAAACAATTATTTCTCGCATCACGATGAGGTTATGTTACTAGGTCACAGTGACAGCTACTCGCCGGACTCCGGAATGCAGCTTTGCTGCTACACTCCCCCTCGCCGCCATGCACCGCTCTCAACCTCAGTCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGTGAATGATTCCATAACAAGAAGGCGACTGATCCAAAACTCAGAGAACGACGAATCTTCTTCCTGCTACACCGGAAACCCCATCGACGACTGCTGGAAATGCGATTCAAATTGGCCAAACAACCGCCAACGCCTCGCCGATTGCGCCATAGGATTTGGCCAGTACGCTTCAGGAGGGAAGAACGGTGAGTTCTACGTCGTCACAGATGACTCCGACGATGATCCAGTCAATCCAGAGCCCGGGACATTACGATACGCCGTTATACAGCCACAGCCTCTCTGGATCGTCTTCCCCGCCAATATGCTCATCAAACTCTCACAGGAACTCATCTTTAACAGCTACAAAACCCTAGACGGCCGGGGCGCCAACGTCCACATCGTCGGCGGCGGTTGCATCACCTTGCAATACATAAGTAACGTCATTATCCACAATATCCACATCCACCATTGTTATCCATCAGGGAACACCATGGTCCGATCAAGTCCGACGCATTACGGATACCGTACGAAATCGGACGGCGACGGGATCTCGATCTTCGGGTCTAAGGACATATGGATTGACCATTGTTCGCTCTCGCATTGCAAGGATGGGCTGATTGATGCGGTGATGGGCTCCACCGGAATCACGATTTCAAACAATTATTTCTCGCATCACGATGAGGTTATGTTACTAGGTCACAGTGACAGCTACTCGCCGGACTCCGGAATGCAGGTAACAATAGCATTCAACCACTTCGGCGAGAAGCTTGTGCAAAGGATGCCACGGTGCCGGCGAGGCTACATCCACGTGGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGCGGGAACCCCACAATCAACAGCCAAGGCAACCGCTACACCGCCCCATACGACCGCAACGCCAAGGAGGTAACCAAGCGTGTAGAAACCACCGAGTCCGAGTGGCGCGGCTGGAACTGGCGCTCTGACGGCGACATCCTCGTCAACGGCGCCTTCTTCATCACTTCCGGCCAAGGCCTCGAAGTCAAGTACGAGAAGGCTTACAGCGTCGAGCCCAAGTCCGCCGCCCTAATCGACCAGCTCACTTGGCACGCCGGTCCACTCGGCGTCGGCAGTAGGGACAACAATTTGGGCATGTGGACCACTGGCTCTAATGGCGGTGGTGGCTTTGTTCTTGGGTCTGGCCCGGATTACACTGACGACATGTCGGAAAGCCTCTCGCGGATCCGGTTTCGATATTTTGTTATGGTATTTTCTTTCTGTGCATTGGCACTTGCCTTTGTGCCATGA 2298 53.74 LCCYTPPRRHAPLSTSVSPASIRALNWLLKKFTALLLHSPSPPCTALNLSLPGQHPSPELVAQEVHRKVNDSITRRRLIQNSENDESSSCYTGNPIDDCWKCDSNWPNNRQRLADCAIGFGQYASGGKNGEFYVVTDDSDDDPVNPEPGTLRYAVIQPQPLWIVFPANMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYSPDSGMQLCCYTPPRRHAPLSTSVSPASIRALNWLLKKFTVNDSITRRRLIQNSENDESSSCYTGNPIDDCWKCDSNWPNNRQRLADCAIGFGQYASGGKNGEFYVVTDDSDDDPVNPEPGTLRYAVIQPQPLWIVFPANMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYSPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETTESEWRGWNWRSDGDILVNGAFFITSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGSRDNNLGMWTTGSNGGGGFVLGSGPDYTDDMSESLSRIRFRYFVMVFSFCALALAFVP 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3875886 3881072 + Cp4.1LG19g03800.1 Cpe19g00431 485839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00431 765 SUPERFAMILY Pectin lyase-like 88 303 IPR011050 -
Cpe19g00431 765 PRINTS Pollen allergen Amb family signature 386 403 IPR018082 -
Cpe19g00431 765 PRINTS Pollen allergen Amb family signature 612 631 IPR018082 -
Cpe19g00431 765 PRINTS Pollen allergen Amb family signature 683 706 IPR018082 -
Cpe19g00431 765 PRINTS Pollen allergen Amb family signature 446 462 IPR018082 -
Cpe19g00431 765 PRINTS Pollen allergen Amb family signature 590 609 IPR018082 -
Cpe19g00431 765 PRINTS Pollen allergen Amb family signature 510 531 IPR018082 -
Cpe19g00431 765 PRINTS Pollen allergen Amb family signature 654 678 IPR018082 -
Cpe19g00431 765 PRINTS Pollen allergen Amb family signature 410 435 IPR018082 -
Cpe19g00431 765 Gene3D - 363 705 IPR012334 -
Cpe19g00431 765 Gene3D - 93 309 IPR012334 -
Cpe19g00431 765 SUPERFAMILY Pectin lyase-like 358 686 IPR011050 -
Cpe19g00431 765 SMART amb_all 438 635 IPR002022 -
Cpe19g00431 765 SMART amb_all 168 354 IPR002022 -
Cpe19g00431 765 Pfam Pectate lyase 448 627 IPR002022 -
Cpe19g00431 765 Pfam Pectate lyase 178 303 IPR002022 -
Cpe19g00431 765 SMART pbh1 519 550 IPR006626 -
Cpe19g00431 765 SMART pbh1 249 280 IPR006626 -
Cpe19g00431 765 SMART pbh1 475 518 IPR006626 -
Cpe19g00431 765 SMART pbh1 205 248 IPR006626 -
Cpe19g00431 765 PANTHER PECTATE LYASE 12-RELATED 46 306 - -
Cpe19g00431 765 PANTHER PECTATE LYASE 12-RELATED 340 723 - -
Cpe19g00431 765 PANTHER PECTATE LYASE 18-RELATED 46 306 IPR045032 GO:0030570
Cpe19g00431 765 PANTHER PECTATE LYASE 18-RELATED 340 723 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00382 Cpe-Chr8:2377087 Cpe19g00431 Cpe-Chr19:3875886 0 dispersed
Cpe19g00431 Cpe-Chr19:3875886 Cpe20g00339 Cpe-Chr20:1918062 2.75E-116 dispersed
Cpe01g02212 Cpe-Chr1:18815530 Cpe19g00431 Cpe-Chr19:3875886 4.06E-129 wgd
Cpe10g00244 Cpe-Chr10:1418792 Cpe19g00431 Cpe-Chr19:3875886 3.24E-166 wgd
Cpe13g00765 Cpe-Chr13:6983856 Cpe19g00431 Cpe-Chr19:3875886 1.67E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00431 K01728 - csv:101203012 790.801