Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00437 AGCTCTCAAATTACACCCATGCCGATCCGTAACATTGCCATTGGAAGGCCCGAGGAGGCTACCCGACCCGATGCTTTGAAGGCTGGGTTGGCCGAGTTCATTTCTACGTTGATTTTTGTTTTTGCCGGCCAGGGTTCCGGTATAGCCTTTGGTAAGCTTACTGACGGTGGCGCCGCCACCCCCGCCGGCCTTATCTCCGCCTCCATCGCCCATGCTTTCGCTCTTTTTGTCGCTGTCTCTGTCGGCGCCAACATCTCCGGCGGCCACGTCAACCCTGCTGTTACCTTTGGCGCCTTCGTTGGTGGCAACATCACCCTCCTACGTGGCATCATTTACTGGATCGCCCAGCTCCTCGGATCCGTCATCGTGATGACGTTTGGATTGGTGTACACGGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACAATTGCACCGATCGCCATCGGTTTCATCGTCGGAGCCAACATTTTGGCCGGTGGAGCCTTCACCGGAGCGTCGATGAACCCTGCCGTAGCATTCGGACCGTCGGTGGTGAGCTGGTCATGGGACAACCACTGGGTCTACTGGGCCGGGCCTTTGGTCGGAGGTGGGCTTGCTGGGCTCATCTACGAGTTCATCTTCATTTCCAACACCCACGAGCAGTTGCCAGTCACCGAGTACTGA 675 57.48 SSQITPMPIRNIAIGRPEEATRPDALKAGLAEFISTLIFVFAGQGSGIAFGKLTDGGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWDNHWVYWAGPLVGGGLAGLIYEFIFISNTHEQLPVTEY 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3899285 3900455 - Cp4.1LG19g03840.1 Cpe19g00437 485845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00437 224 Gene3D Glycerol uptake facilitator protein. 10 121 IPR023271 -
Cpe19g00437 224 Gene3D Glycerol uptake facilitator protein. 122 223 IPR023271 -
Cpe19g00437 224 PANTHER AQUAPORIN-8 7 122 IPR034294 -
Cpe19g00437 224 PANTHER AQUAPORIN TIP1-1 122 220 - -
Cpe19g00437 224 PANTHER AQUAPORIN-8 122 220 IPR034294 -
Cpe19g00437 224 PRINTS Major intrinsic protein family signature 27 46 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00437 224 PRINTS Major intrinsic protein family signature 108 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00437 224 PRINTS Major intrinsic protein family signature 71 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00437 224 PRINTS Major intrinsic protein family signature 190 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00437 224 CDD MIP 27 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00437 224 SUPERFAMILY Aquaporin-like 19 218 IPR023271 -
Cpe19g00437 224 Pfam Major intrinsic protein 122 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g00437 224 PANTHER AQUAPORIN TIP1-1 7 122 - -
Cpe19g00437 224 ProSitePatterns MIP family signature. 89 97 IPR022357 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00246 Cpe19g00437 CCT
Cpe03g00205 Cpe19g00437 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00544 Cpe-Chr17:4517086 Cpe19g00437 Cpe-Chr19:3899285 4.25E-84 dispersed
Cpe19g00437 Cpe-Chr19:3899285 Cpe20g00187 Cpe-Chr20:1083503 1.34E-88 dispersed
Cpe13g00078 Cpe-Chr13:604864 Cpe19g00437 Cpe-Chr19:3899285 1.55E-43 transposed
Cpe10g00246 Cpe-Chr10:1431950 Cpe19g00437 Cpe-Chr19:3899285 7.09E-143 wgd
Cpe19g00437 Cpe-Chr19:3899285 Cpe03g00205 Cpe-Chr3:1022954 1.07E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00437 K09873 - csv:101204225 393.275