Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00441 ATGCGCCTCTTCTTTTGCCTCATCTCCTTCTTACCCTCCTTCTTCCTCACCGGCACGGTCCCCGTCTCCACCGCCGCCGCCGCCGCCGCCGCCTTCTCCGCCCACCATTTCCCTCTCCACAGAGCCTTCCCCCACTCTCCCACTCCCCATTTTCATTCCCTCAGAGCTCGCGACCGTCTCCGCCATTCCCGCGTCTTGCGCCGATTGCGTGGTGGCATCGTCGACTTCTCCGTTAAAGGCTCCTCCGATCAATTCGTCGGGCTTTATTACACCAAAGTGAAGTTGGGCAATCCCCAGAGGGAATTCAACGTGCAGATCGATACTGGGAGTGACATTTTGTGGGTCAATTGCAGTCCTTGCGATGGTTGTCCCCAATCAAGCGGACTTGGAATAGAACTCAACTTGTTTGATACTGCAATGTCGTCGTCTGCTAGGCTTGTTTCCTGCTCTGATCCGATATGTTCTGCAGTTCCGACCACCACAAATCAATGCTTATCCCAGAATGACAACTGCAATTACACCTTCCAGTATCGAGATAGAAGTGCGACGTCAGGCTTTTATGTTACTGATTCAATGTATTTTGATATGATTCTTGGGGAGTCTGTGATTGCAAACTCTTCAGCCGCTATTGTTTTTGGGTGTAGCATATATCAGTATGGGGATTTGACTCGAACAACCGTAGCACTTGATGGAATTTTTGGATTTGGTCGAGGGGAGTTTTCAGTTATATCACAATTATCGTCTCGAGGGATAACACCTAAAGTTTTCTCTCACTGTTTGAAAGGAGGGGAAAATGGAGGGGGTATCTTGGTTCTTGGTGAGATTCTGGAGCCCAGCATTGTTTATAGTCCACTTATTCCATCTCAGCCGCACTATACCTTAAATCTACAGAGTATTGCAATCAGCGGGCAACCATTTCCAAATCCCACAGTGTTTTCAATATCAAATGCAGGAGGAACCATTATTGACTCTGGAACAACTTTAGCATATCTTGTGGAAGAAGTTTACAACTGGATTGTCTCTGTAATAACTTCTGCTGTTTCTCAATCAACCACCCCTACAATTTCCAGGGGTAGCCAATGTTATCGAGTCTCGACAAGTGTATCAGAAGTATTTCCAGTGATCAGCTTTAATTTTGAGGGTATTGCATCCATGGTGCTGAAACCTGAAGAATATCTTCAGTTTGACTCCATAGAACCTGCTTTACGGTGCATCGGTTTTCAGAAAGCCGAGGATGGAATAAATATTTTAGGAGATCTTGTTTTGAAAGATAAGATCGTTGTCTATGACTTAGCTCGACAACGGGTCGGATGGGCCAATTATGACTGTTCGTCATCTGTAAATGTTTCTGTAACGTCCGGGAAGGACGTGTTCATCGATGGACAGCTGAGTGTCAGCAGCTCCTCGAGAAAGCATTTCTATCAGCTGCTCCACATCGTCGTTGTACTACTAATACATTTGAAATTGTTTTGA 1473 46.03 MRLFFCLISFLPSFFLTGTVPVSTAAAAAAAFSAHHFPLHRAFPHSPTPHFHSLRARDRLRHSRVLRRLRGGIVDFSVKGSSDQFVGLYYTKVKLGNPQREFNVQIDTGSDILWVNCSPCDGCPQSSGLGIELNLFDTAMSSSARLVSCSDPICSAVPTTTNQCLSQNDNCNYTFQYRDRSATSGFYVTDSMYFDMILGESVIANSSAAIVFGCSIYQYGDLTRTTVALDGIFGFGRGEFSVISQLSSRGITPKVFSHCLKGGENGGGILVLGEILEPSIVYSPLIPSQPHYTLNLQSIAISGQPFPNPTVFSISNAGGTIIDSGTTLAYLVEEVYNWIVSVITSAVSQSTTPTISRGSQCYRVSTSVSEVFPVISFNFEGIASMVLKPEEYLQFDSIEPALRCIGFQKAEDGINILGDLVLKDKIVVYDLARQRVGWANYDCSSSVNVSVTSGKDVFIDGQLSVSSSSRKHFYQLLHIVVVLLIHLKLF 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3927821 3932779 + Cp4.1LG19g03750.1 Cpe19g00441 485849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00441 490 SUPERFAMILY Acid proteases 84 447 IPR021109 -
Cpe19g00441 490 Gene3D Acid Proteases 274 451 IPR021109 -
Cpe19g00441 490 PRINTS Pepsin (A1) aspartic protease family signature 95 115 IPR001461 GO:0004190|GO:0006508
Cpe19g00441 490 PRINTS Pepsin (A1) aspartic protease family signature 320 331 IPR001461 GO:0004190|GO:0006508
Cpe19g00441 490 PRINTS Pepsin (A1) aspartic protease family signature 415 430 IPR001461 GO:0004190|GO:0006508
Cpe19g00441 490 CDD pepsin_A_like_plant 89 443 IPR034161 -
Cpe19g00441 490 Pfam Xylanase inhibitor N-terminal 89 273 IPR032861 -
Cpe19g00441 490 ProSiteProfiles Peptidase family A1 domain profile. 89 439 IPR033121 -
Cpe19g00441 490 Gene3D Acid Proteases 73 273 IPR021109 -
Cpe19g00441 490 Pfam Xylanase inhibitor C-terminal 291 439 IPR032799 -
Cpe19g00441 490 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 23 460 - -
Cpe19g00441 490 PANTHER ASPARTYL PROTEASES 23 460 IPR001461 GO:0004190|GO:0006508
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g01063 Cpe19g00441 CCT
Cpe08g01063 Cpe19g00441 ECH
Cpe03g00220 Cpe19g00441 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02060 Cpe-Chr1:17455236 Cpe19g00441 Cpe-Chr19:3927821 1.99E-37 dispersed
Cpe18g00233 Cpe-Chr18:3973122 Cpe19g00441 Cpe-Chr19:3927821 1.00E-23 dispersed
Cpe16g00494 Cpe-Chr16:5997256 Cpe19g00441 Cpe-Chr19:3927821 4.85E-135 wgd
Cpe19g00441 Cpe-Chr19:3927821 Cpe03g00220 Cpe-Chr3:1095203 1.32E-169 wgd
Cpe19g00441 Cpe-Chr19:3927821 Cpe05g00440 Cpe-Chr5:2526151 0 wgd
Cpe19g00441 Cpe-Chr19:3927821 Cpe08g01063 Cpe-Chr8:8099955 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00441 - - csv:101205203 757.673