Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00442 ATGGAGGCTCGTCTTCTCAACGCGCCGATTTTTGAACCACTTACTCGTAAATGTCTTCTTCCGCCCCCATTTTCTTTCTCGAGAGGGGCGTCCATTCCGATTGACAATCGAAGCGGAATGAGACTTACCAGGCGGGTACACTGCCAAGCCATGGTTTCAAAAGACACGGTTGATATCTCTAACAGTCCTGTATTGGACACTTCGATTGCGACTCTTGGAGATGCATTGGCGGCGTCCCCTTCGCCTCCTCCCAAAAGGGTATCGGCGGATTCGCTGCAGTTCCCGCCTGGATATCTTGGCGCCGTTCCCGACCGTTCGGGTTCTGATGGCGGCGAGGATGGCCTTGATGCGATGGAGTATTTGACCAGGATTTTGGGTTCGAAGGTGTATGAATTGGCTATTGAATCCCCTTTGCAGCTTGCGCCCAAGTTGTCTGAGCGTTTAGGGGTCAATATCTGGCTCAAGAGGGAGGACTTGCAGCCTGTGTTTTCATTCAAGCTTCGAGGAGCTTATAATATGATGGCTAAACTTCCTAAAGAACAGTTGGAAAAAGGAGTTATATGCTCCTCAGCTGGAAATCATGCTCAAGGAGTTGCATTGGCTGCTAAGCGATTGAAATGTGATGCTGTGATTGCTATGCCTGTTACGACACCCGAAATTAAGTGGCAATCAGTTCAAAAACTGGGTGCAACTGTTGTTCTTGTTGGAGATTCGTACGACGAGGCACAAGCGTATGCTAAGAAGCGGAGCAAAGAGGAAGGGCGTACGTTCATACCCCCTTTTGATCACCCTGATGTCATAGCTGGGCAGGGTACTGTTGGGATGGAGATTGTTCGTCAAATGAAGGGTCCATTGCATGCTATTTTTGTGCCTGTTGGAGGTGGTGGTCTGATTGCTGGTATTGCTGCTTATGTCAAGAGGGTTTCTCCGGAGGTAAAGATTATTGGGGTGGAGCCATCTGATGCAAATGCGATGGCACTATCATTATGTCATGGCCAAAGAATAATGTTGGACAAGGCTGGAGTTTTTGCAGATGGTGTGGCTGTCAAAGAAGTCGGTGAAGAAACGTTTCGCCTTTGCAAAGATCTCATGGATGGTGTAGTTCTTGTTAGTCGTGATGCTATATGTGCATCGATAAAGGATATGTTTGAAGAGAAGAGGAGCATCTTGGAACCTGCAGGTGCTCTTTCTCTTGCTGGAGCTGAGGCATACTGCAAATATTATGGTTTGAAGGGAGAAAATGTTGTGGTAATAACCAGTGGTGCAAATATGAACTTTGACAAACTGAGAATAGTTACCGAACTTGCCAATGTCGGTGCTGAACGAGAGGCTGTTCTCGCAACTATAGTGCCGGAGAAACCTGGAAGCTTTAAAAAATTTTGTGAACTGGTTGGTCCTATGAACATTACAGAATTCAAGTACAGATATAACTCTGAAAAAGAGGCAGTTGTTCTTTATAATGTTGGTATGCATATGCCTTCAGAACTTGAAGAAATGAAGAACAGGATGAAGGCTTCTCAGCTTGAAACTTATAATCTCACAAAAAATGATCTTGTAAAGGATCACTTGCGTTACTTGATGGGAGGCAAATCGAACGTTGAAAACGAAGTTCTTTGTCGTTTTATTTTCCCAGAAAGGCCAGGTGCTCTCGAGAAGTTCTTAGACGCTTTCAGTCCTCGCTGGAACATTAGTTTGTTTCATTATCGTGGGCAGGGTGAAACTGGTGCAAATATATTGGTTGGACTTCAGATCGACAAATCAGACATGATCGAATTCCACGAACGTGCTAGGAGGCTTGCATACGACTATGTCGTGGTAACTGATGATGGTGTGTTTCAGCTTCTAATGCACACATAG 1857 45.5 MEARLLNAPIFEPLTRKCLLPPPFSFSRGASIPIDNRSGMRLTRRVHCQAMVSKDTVDISNSPVLDTSIATLGDALAASPSPPPKRVSADSLQFPPGYLGAVPDRSGSDGGEDGLDAMEYLTRILGSKVYELAIESPLQLAPKLSERLGVNIWLKREDLQPVFSFKLRGAYNMMAKLPKEQLEKGVICSSAGNHAQGVALAAKRLKCDAVIAMPVTTPEIKWQSVQKLGATVVLVGDSYDEAQAYAKKRSKEEGRTFIPPFDHPDVIAGQGTVGMEIVRQMKGPLHAIFVPVGGGGLIAGIAAYVKRVSPEVKIIGVEPSDANAMALSLCHGQRIMLDKAGVFADGVAVKEVGEETFRLCKDLMDGVVLVSRDAICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYGLKGENVVVITSGANMNFDKLRIVTELANVGAEREAVLATIVPEKPGSFKKFCELVGPMNITEFKYRYNSEKEAVVLYNVGMHMPSELEEMKNRMKASQLETYNLTKNDLVKDHLRYLMGGKSNVENEVLCRFIFPERPGALEKFLDAFSPRWNISLFHYRGQGETGANILVGLQIDKSDMIEFHERARRLAYDYVVVTDDGVFQLLMHT 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3934535 3939769 + Cp4.1LG19g03790.1 Cpe19g00442 485850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00442 618 Pfam C-terminal regulatory domain of Threonine dehydratase 434 523 IPR001721 -
Cpe19g00442 618 Pfam C-terminal regulatory domain of Threonine dehydratase 528 614 IPR001721 -
Cpe19g00442 618 CDD Thr-dehyd 121 425 - -
Cpe19g00442 618 CDD ACT_ThrD-I_1 443 526 - -
Cpe19g00442 618 ProSiteProfiles ACT-like domain profile. 444 515 IPR001721 -
Cpe19g00442 618 Pfam Pyridoxal-phosphate dependent enzyme 134 421 IPR001926 -
Cpe19g00442 618 SUPERFAMILY ACT-like 524 616 IPR045865 -
Cpe19g00442 618 Gene3D - 137 415 IPR036052 -
Cpe19g00442 618 TIGRFAM ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 119 615 IPR005787 GO:0004794|GO:0009097
Cpe19g00442 618 CDD ACT_ThrD-I_2 536 616 - -
Cpe19g00442 618 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 157 170 IPR000634 GO:0006520|GO:0030170
Cpe19g00442 618 Gene3D - 169 260 IPR036052 -
Cpe19g00442 618 ProSiteProfiles ACT-like domain profile. 537 608 IPR001721 -
Cpe19g00442 618 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 44 616 - -
Cpe19g00442 618 Gene3D Biosynthetic Threonine Deaminase; Domain 3 443 617 IPR038110 -
Cpe19g00442 618 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 119 471 IPR036052 -
Cpe19g00442 618 PANTHER THREONINE DEHYDRATASE 44 616 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00253 Cpe19g00442 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00324 Cpe-Chr5:1810926 Cpe19g00442 Cpe-Chr19:3934535 1.88E-35 dispersed
Cpe19g00442 Cpe-Chr19:3934535 Cpe12g00378 Cpe-Chr12:2706459 5.37E-07 dispersed
Cpe10g00253 Cpe-Chr10:1514548 Cpe19g00442 Cpe-Chr19:3934535 1.80E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00442 K01754 - csv:101205909 1046.96