Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe19g00444 | ATGAAGCTGCCGATATTTGTAATCCCTCTGGTCGCCGTTTCTTGTCTTCTTGCTGTCTTGGGTCCTCAGTTTTCCTCCGACTGGACCAGTTTCTTCGATAAACATGCTTCCGCTTGGAGCTCTGTTTCTTCTCCCACCGAAACAGAGGATTTTCGTTCCAATACGACGGCGGCGGTCAACGACTCTGTTTCAAACCACTCTGTTTCCTCTCCTTTTTCTTCTTCTCCGCCGCCTCTGCCGCCGTCGTCGTTGTCGTCGTCGTCATCCTCACCACCACCGCCAATCGACGAAAAACAGAGTCTTCCACAGCTCCCAAACATGACGACAGTCAACGAAGTTTTGGAAGAAACCGCCATTAATGAAGGGAGAAACGTTTCGTCTGAAGGTAATTATGAACCGGCGGTGGTGAAGGCCAGAAAACAGAGGGAATTTACAAAATTGGAAAAAATCGAAGCTGGGCTCAGACGAGCACGAGCCGCCATTAAAGAAGCCAAGTTCCTGAACCAAACCCATGATCCGGATCTTGTTCCCTCTGAAATGGAGAAGGAGCTGAAGATCTTCGTGTACGAGGAAGGAGAGCCTCCCCTGTTTCACAATGGCCCCTGCAAGAGCATTTACTCGACCGAAGGGAACTTCATCCACGCCATTGAAATGGACACCAAGTTTCGAACCAAAGATCCCGACAAAGCCCATGTCTTCTTTCTTCCTCTAAGTGTTGCCATGCTCGTTCAGTTCGTCTACGTTCGTGACTCCCATGACTTCACACCGATACGACGCACAGTCGTCGATTATGTCAATGTCATTCGAACCAAATATCCGTTCTGGAATCGCACCCTTGGCGCCGATCATTTCATGCTGTCCTGCCATGATTGGGGGCCGGAAGCGTCAAGATCGGTTCCCCATTTGTACAAAAACTCCATTAGAGTACTCTGCAACGCCAACACGTCCGAAGGTTTCAACCCGTCAAAGGACGTTTCCTTCCCAGAAATCAACCTCCAAACGGGTTTCTTGACCGGAATTATAGGCGGCCCATCTCCCTCCCGCCGCCCAATTCTGGCGTTCTTCGCCGGCGGCCTCCACGGCCCCATAAGGCCTATTCTAATCCAGCAATGGGAGAATCAAGACAGCGACGTTCAAGTCCACAAATACCTCCCCAAGGACGTTTCTTACATCGACATGATGAGGAAGAGCAAGTTTTGCCTCTGCCCGAGCGGCTACGAAGTTGCTAGCCCTCGAATTGTCGAGGCCATTTACACCGGGTGCGTTCCGGTCCTCATTTCCGACCACTATGTCCCTCCGTTCAGCGACGTTATCAATTGGAAATCTTTCTCGGTCTCCGTCTCCATCAAGGACATTCCCAATTTGAAGACGATTCTCAGCGGGATATCGCCGAGGCAGTACCTGAGAATGTATCGGAGAGTGTTGAAGGTTAGGAGACACTTTGAAGCCCACTCTCCGCCTAAGAGATTTGATGTGTATCACATGATTCTTCATTCTGTGTGGCTTAGAAGACTCAATCTTAGGGTGCGCGACCGTTGA | 1539 | 50.42 | MKLPIFVIPLVAVSCLLAVLGPQFSSDWTSFFDKHASAWSSVSSPTETEDFRSNTTAAVNDSVSNHSVSSPFSSSPPPLPPSSLSSSSSSPPPPIDEKQSLPQLPNMTTVNEVLEETAINEGRNVSSEGNYEPAVVKARKQREFTKLEKIEAGLRRARAAIKEAKFLNQTHDPDLVPSEMEKELKIFVYEEGEPPLFHNGPCKSIYSTEGNFIHAIEMDTKFRTKDPDKAHVFFLPLSVAMLVQFVYVRDSHDFTPIRRTVVDYVNVIRTKYPFWNRTLGADHFMLSCHDWGPEASRSVPHLYKNSIRVLCNANTSEGFNPSKDVSFPEINLQTGFLTGIIGGPSPSRRPILAFFAGGLHGPIRPILIQQWENQDSDVQVHKYLPKDVSYIDMMRKSKFCLCPSGYEVASPRIVEAIYTGCVPVLISDHYVPPFSDVINWKSFSVSVSIKDIPNLKTILSGISPRQYLRMYRRVLKVRRHFEAHSPPKRFDVYHMILHSVWLRRLNLRVRDR | 512 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 3956634 | 3959210 | + | Cp4.1LG19g03760.1 | Cpe19g00444 | 485852 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe19g00444 | 512 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 15 | - | - | |
| Cpe19g00444 | 512 | PANTHER | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED | 127 | 509 | IPR004263 | GO:0006486|GO:0016757 | |
| Cpe19g00444 | 512 | MobiDBLite | consensus disorder prediction | 62 | 104 | - | - | |
| Cpe19g00444 | 512 | PANTHER | GLYCOSYLTRANSFERASE | 127 | 509 | - | - | |
| Cpe19g00444 | 512 | Pfam | Exostosin family | 181 | 460 | IPR040911 | - | |
| Cpe19g00444 | 512 | MobiDBLite | consensus disorder prediction | 73 | 88 | - | - | |
| Cpe19g00444 | 512 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 193 | 430 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe10g00255 | Cpe19g00444 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe11g00321 | Cpe-Chr11:1716169 | Cpe19g00444 | Cpe-Chr19:3956634 | 6.17E-124 | dispersed | |
| Cpe11g01049 | Cpe-Chr11:8799549 | Cpe19g00444 | Cpe-Chr19:3956634 | 9.74E-138 | dispersed | |
| Cpe14g00638 | Cpe-Chr14:4102320 | Cpe19g00444 | Cpe-Chr19:3956634 | 3.37E-36 | dispersed | |
| Cpe16g00507 | Cpe-Chr16:6094284 | Cpe19g00444 | Cpe-Chr19:3956634 | 1.68E-30 | dispersed | |
| Cpe17g00848 | Cpe-Chr17:6587556 | Cpe19g00444 | Cpe-Chr19:3956634 | 5.64E-110 | dispersed | |
| Cpe18g00408 | Cpe-Chr18:5271945 | Cpe19g00444 | Cpe-Chr19:3956634 | 4.32E-104 | dispersed | |
| Cpe18g00518 | Cpe-Chr18:5894296 | Cpe19g00444 | Cpe-Chr19:3956634 | 3.13E-135 | dispersed | |
| Cpe01g00163 | Cpe-Chr1:919165 | Cpe19g00444 | Cpe-Chr19:3956634 | 6.45E-35 | transposed | |
| Cpe14g00639 | Cpe-Chr14:4106574 | Cpe19g00444 | Cpe-Chr19:3956634 | 1.28E-38 | transposed | |
| Cpe10g00255 | Cpe-Chr10:1534647 | Cpe19g00444 | Cpe-Chr19:3956634 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe19g00444 | - | - | csv:101205910 | 805.823 |