Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cpe19g00447	ATGGAAGCTCAGGAAAGTAGGGTTGGAGGAGTGGATGAGAAGAAGAAGAGGTTCAGTCGGGATCAATTGGAGTCATTGGAGAGAAGCTTTCAAGAGGAAGTGAAGCTTGAACCTGAGAGAAAAATGAAGCTATCAAAGGAGATTGGACTCCAACCAAGGCAGATAGCGGTGTGGTTCCAGAATAGAAGAGCTCGCTCAAAGGTTAAGCAGCTTCAGCATCTCTATGACACTCTCAAACAAGAATTTGACGCCATTTCTATGGAAAAACTTGACCTTCAACAACAGGTGAGGGAACTAAGAAGCATGCTAAGAGAACAAGCGGTAAGGAATCACGGGTCGATGGCTTACATGACCGTCTCCGAGGAAGAGGCGGCAGAGAGCACGGCAGAGGGCGTTCGGAGCTGGAATAATCACATCTTTAATGTCGAAAATGTCGAACAAATATCAGCTTCTTCAATTCCTTCACCCTGGTCTTGTTCTCAAGTTGCTCACTTGCCTTCTTATCCATAA	510	45.69	MEAQESRVGGVDEKKKRFSRDQLESLERSFQEEVKLEPERKMKLSKEIGLQPRQIAVWFQNRRARSKVKQLQHLYDTLKQEFDAISMEKLDLQQQVRELRSMLREQAVRNHGSMAYMTVSEEEAAESTAEGVRSWNNHIFNVENVEQISASSIPSPWSCSQVAHLPSYP	169

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
19	3966973	3967722	-	Cp4.1LG19g03670.1	Cpe19g00447	485855

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cpe19g00447	169	ProSiteProfiles	'Homeobox' domain profile.	9	69	IPR001356	GO:0003677
	Cpe19g00447	169	ProSitePatterns	'Homeobox' domain signature.	44	67	IPR017970	GO:0000981\|GO:0006355
	Cpe19g00447	169	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	12	146	IPR045224	GO:0003700
	Cpe19g00447	169	Coils	Coil	61	95	-	-
	Cpe19g00447	169	SMART	HOX_1	12	73	IPR001356	GO:0003677
	Cpe19g00447	169	Pfam	Homeodomain	14	67	IPR001356	GO:0003677
	Cpe19g00447	169	PRINTS	Lambda-repressor HTH signature	49	65	IPR000047	GO:0003677
	Cpe19g00447	169	PRINTS	Lambda-repressor HTH signature	40	49	IPR000047	GO:0003677
	Cpe19g00447	169	PANTHER	HOMEOBOX LEUCINE ZIPPER PROTEIN	12	146	-	-
	Cpe19g00447	169	Gene3D	-	9	74	-	-
	Cpe19g00447	169	SUPERFAMILY	Homeodomain-like	14	79	IPR009057	-
	Cpe19g00447	169	CDD	homeodomain	14	70	IPR001356	GO:0003677

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cpe10g00259	Cpe19g00447	CCT
	Cpe08g01057	Cpe19g00447	CCT
	Cpe03g00223	Cpe19g00447	CST

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cpe10g00259	Cpe-Chr10:1554694	Cpe19g00447	Cpe-Chr19:3966973	2.21E-62	dispersed
	Cpe19g00447	Cpe-Chr19:3966973	Cpe01g02383	Cpe-Chr1:19921644	5.12E-28	dispersed
	Cpe10g00258	Cpe-Chr10:1547782	Cpe19g00447	Cpe-Chr19:3966973	7.28E-59	wgd
	Cpe19g00447	Cpe-Chr19:3966973	Cpe03g00223	Cpe-Chr3:1113229	1.61E-52	wgd
	Cpe19g00447	Cpe-Chr19:3966973	Cpe08g01057	Cpe-Chr8:8066394	1.61E-39	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	50980	PF00046	Homeodomain	1.30E-16	CL0123	Cpe	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cpe19g00447	-		-	cmax:111471145	296.589