Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00448 ATGCCTTCGAATCACTTGCTTCTTGAGGAACCGATTAGGATGGCTTCCATTTTGGAGCCTTCAAAGGATAGCGTCTTGCCGACAATGACGAAGATCGTTGGTACTTTGGGCCCTAAGTCCCGATCTGTCGAAGTTATTTCTGCCTGTCTAAGGGCTGGAATGTCTGTTGCTCGGTTCGACTTTTCATGGGGCAGTCCTGATTACCATCAAGAAACTTTGGACAATTTGAAGGCGGCTGTTAAGAACACCAACAAACTTTGCGCTGTTATGCTGGATACAGTGGGTCCTGAGATCCTGGTTGTAAACAGAAATGAGAAATCTATCTCTCTTAAGGAAGATGAGTTGGTTGTTTTGACACCCAATCAAGAAATAGATGCGTCTTCGGAGGTGCTGCCTATAAGTTATAATGGACTTTCAAAGGTCGTTAAGAAAGGAGACACCCTATTTCTTGGTCAGTACCTCTTCACTGGAAGTGAAACAACTTCTGTCTGGCTGGAGGTCTCCGAAGTGAAAGGAGATGATGTTCTTTGCTTGGTAAAGAACTCTGCCACGTTGGTTGGAACAATGTACACTTTGCATGCAGCTGAAATTCGCATTGATCTTCCAACACTTACTGACAAAGATAAGGAGATTATAGCGACGTGGGGAGTAAAAAACAAGATTGACTTCCTCTCTCTCTCACATGCTAGACAAGCGGAGGATGTTCGCCAAGCTCGACAATTTCTTTCTAAGCTAGGCAACCTTAGCCAAACTCAAATCTTTGCGAAGATTGAAAGCGTTGAGGGATTAACCCATTTTGATGAGATACTACAAGAAGCAGATGGTATTATTCTTGCTCGTGGCAATTTGGGGTTAGATCTTCCTCCTGAGAAGGTATTCTTGTTTCAGAAAACTGCCCTTCATAGATGTAATATGGCTGGAAAGCCCGCTGTTTTGACTCGTGTGGTAGACAGCATGACTAGCAACTTGAGACCTACACGTGCAGAAGCTACTGATGTTGCCAATGCTGTACTTGATGGAAGTGATGCAATTCTTCTTGGGGCTGAGACATTGCGTGGATTATATCCAGTAGAAACCATTTCAACTGTTCGTAGAATATGCGCTGAGTCGGAGAAGGTTTTCAATCAAGACTTTTATTTCAAGAAGGCAGTCAAGCGTACCGGGGAGCCAATGTCACACTTAGAATCTATTGCCTCCACAGCTGTTAGGGCAGCCATTAAAGTGAAGGCTTCCGTGATTATATGCTTTACTTCAACTGGAAGGGCTGCTAGATTAATTGCAAAGTATAGGCCAACGATGCCCGTTATATCTGTTGTCATTCCAAGGCTGCAAACAAATCAATTAAAGTGGAGTCTGAGTGGAGCATTTGAGGCGGACTCTAACAATGCAACAAATGAGTCAGTTCTGAAGGCTGCTCTAGATCATGGAAAGTTAGCAGGAATCATTAAGGCACATGACCGCGTAGTGGTTTGCCAGAAAGTTGGTGATGCATCAGTAGTAAAGATTATCGAGCTTGAAGATTGA 1524 43.7 MPSNHLLLEEPIRMASILEPSKDSVLPTMTKIVGTLGPKSRSVEVISACLRAGMSVARFDFSWGSPDYHQETLDNLKAAVKNTNKLCAVMLDTVGPEILVVNRNEKSISLKEDELVVLTPNQEIDASSEVLPISYNGLSKVVKKGDTLFLGQYLFTGSETTSVWLEVSEVKGDDVLCLVKNSATLVGTMYTLHAAEIRIDLPTLTDKDKEIIATWGVKNKIDFLSLSHARQAEDVRQARQFLSKLGNLSQTQIFAKIESVEGLTHFDEILQEADGIILARGNLGLDLPPEKVFLFQKTALHRCNMAGKPAVLTRVVDSMTSNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISTVRRICAESEKVFNQDFYFKKAVKRTGEPMSHLESIASTAVRAAIKVKASVIICFTSTGRAARLIAKYRPTMPVISVVIPRLQTNQLKWSLSGAFEADSNNATNESVLKAALDHGKLAGIIKAHDRVVVCQKVGDASVVKIIELED 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3970801 3979515 - Cp4.1LG19g03730.1 Cpe19g00448 485856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00448 507 PRINTS Pyruvate kinase family signature 221 235 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe19g00448 507 PRINTS Pyruvate kinase family signature 280 304 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe19g00448 507 PRINTS Pyruvate kinase family signature 329 347 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe19g00448 507 PRINTS Pyruvate kinase family signature 348 364 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe19g00448 507 PRINTS Pyruvate kinase family signature 85 101 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe19g00448 507 PRINTS Pyruvate kinase family signature 253 279 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe19g00448 507 PANTHER PYRUVATE KINASE 3 456 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe19g00448 507 Gene3D - 371 493 IPR036918 -
Cpe19g00448 507 PANTHER PYRUVATE KINASE 457 507 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe19g00448 507 SUPERFAMILY PK beta-barrel domain-like 96 186 IPR011037 -
Cpe19g00448 507 Gene3D - 29 370 IPR040442 -
Cpe19g00448 507 Pfam Pyruvate kinase, barrel domain 30 375 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe19g00448 507 SUPERFAMILY PK C-terminal domain-like 358 500 IPR036918 -
Cpe19g00448 507 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 7 375 IPR015813 GO:0003824
Cpe19g00448 507 Gene3D - 96 202 IPR015806 GO:0004743|GO:0006096
Cpe19g00448 507 TIGRFAM pyruv_kin: pyruvate kinase 29 496 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe19g00448 507 Pfam Pyruvate kinase, alpha/beta domain 395 502 IPR015795 -
Cpe19g00448 507 PANTHER PYRUVATE KINASE 457 507 - -
Cpe19g00448 507 PANTHER PYRUVATE KINASE 3 456 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00260 Cpe19g00448 CCT
Cpe10g00260 Cpe19g00448 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00448 Cpe-Chr19:3970801 Cpe05g00197 Cpe-Chr5:1058077 1.30E-49 dispersed
Cpe19g00448 Cpe-Chr19:3970801 Cpe19g00449 Cpe-Chr19:3980668 0 tandem
Cpe10g00260 Cpe-Chr10:1558667 Cpe19g00448 Cpe-Chr19:3970801 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00448 K00873 - csv:101206620 892.108