Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00465 ATGGCGGAAGAACACAGATGCCAAGCACCTGAAGGTCACCGTCTCTGTGCTAATAATTGTGGCTTCTTTGGCAGTCCAGCCACCATGGATCTCTGCTCCAAATGTTACAGAGACTTTCGCCTCAAAGAACAAGAACAAGCCTCTACCAAATCCACCATCGAAGCCGCTCTCTCAGCCTCATCTTCTTCTTCTTCTTCTCCTTCCTCTTCACTGATCGATCCTCCTCCCGTTTCCCCTATTGTAGCCTTGCCTTCGCCGGACACAGATCTGACCATCCCGCCCCTTGCAGCGGCTGGATCTGAGGCGGTCATCCAGTTGTGCCCAAACCCGAACCCGAATCGGTGTTCGTCGTGCCGTAAGAAAGTCGGTTTGACCGGGTTCAGATGCAGATGCGGAATCACGTTCTGTGGAGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGATTTCAAGTCAATCGGAAGAGAGGAGATCGCTCGTGCGAACCCCGTCGTGAAAGCCGACAAACTGGAGAGAATTTGA 525 52.95 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSSSSSSPSSSLIDPPPVSPIVALPSPDTDLTIPPLAAAGSEAVIQLCPNPNPNRCSSCRKKVGLTGFRCRCGITFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4108060 4108584 + Cp4.1LG19g05210.1 Cpe19g00465 485873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00465 174 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Cpe19g00465 174 SMART AN1_Zf_4 115 152 IPR000058 GO:0008270
Cpe19g00465 174 ProSiteProfiles Zinc finger AN1-type profile. 109 155 IPR000058 GO:0008270
Cpe19g00465 174 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 174 - -
Cpe19g00465 174 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Cpe19g00465 174 MobiDBLite consensus disorder prediction 50 85 - -
Cpe19g00465 174 Gene3D - 1 71 - -
Cpe19g00465 174 Pfam AN1-like Zinc finger 115 151 IPR000058 GO:0008270
Cpe19g00465 174 MobiDBLite consensus disorder prediction 50 71 - -
Cpe19g00465 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 59 - -
Cpe19g00465 174 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 174 - -
Cpe19g00465 174 Gene3D - 99 170 IPR035896 -
Cpe19g00465 174 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Cpe19g00465 174 SUPERFAMILY AN1-like Zinc finger 109 169 IPR035896 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00274 Cpe-Chr5:1528454 Cpe19g00465 Cpe-Chr19:4108060 9.00E-49 dispersed
Cpe05g00411 Cpe-Chr5:2318044 Cpe19g00465 Cpe-Chr19:4108060 5.67E-57 dispersed
Cpe13g00197 Cpe-Chr13:1518688 Cpe19g00465 Cpe-Chr19:4108060 2.61E-33 dispersed
Cpe16g00809 Cpe-Chr16:7859759 Cpe19g00465 Cpe-Chr19:4108060 5.24E-60 dispersed
Cpe17g00677 Cpe-Chr17:5440669 Cpe19g00465 Cpe-Chr19:4108060 1.94E-33 dispersed
Cpe18g00162 Cpe-Chr18:3242304 Cpe19g00465 Cpe-Chr19:4108060 1.89E-42 dispersed
Cpe09g00133 Cpe-Chr9:792886 Cpe19g00465 Cpe-Chr19:4108060 1.65E-28 transposed
Cpe10g00277 Cpe-Chr10:1643495 Cpe19g00465 Cpe-Chr19:4108060 4.59E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00465 - - bhj:120073734 297.36