Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00497 ATGCAAATACTTCTCAACTTTCATGCCATTTCCATCTTCCTTCTGCAAATCCACTGTGTTTCATTTCTCTTGTTCCTTGGATTCTCCATGCGTGGCGGCGGCTCTCGAGCTCCGAACAGGTCGGAGCCACTGCCGCACACCCAACCTGCTCAGATCCTGCCGCCTCTCAAGCGGCAGCTTGCTTTCGAGTTGTCTAGGCCGCCGTTCGTTCCTCCGGGTGACTATTACCACTTTGGCGGTGGTTCTTCCAATGCTCTTGATCAACAGCCTGATGCTATCGTCGTTAAACCTCTCAAACCAAAACAGAAGGGGGCCATGTATAACCATGTGGTTGAATCTAGTGACTGCATTCATGATCAGAGTTCTTCAAAAGATGCTCTAAGTTTTGTACAGACACCTGTATCTGCAAAAGGCGGAAGGGTATACAATAAGGCAAAGACTCCAAGAAGAGCTACGTCTGGGCCTGGAACACCTATCTCAGACACTAGCACTTATTCTCCTCTTACCCCAGCTGGAAACTGTCGACATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACCTTGAAGGTGCAGAAAAGGAGAATATATGACATTACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATGTTGGAAGGGATTCAATGCCCAAAGTCCAGGAAATGTGGATAGTGATACTGCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGAAGATAAGATAAGCGCATTGCAGGAAAGACTGAGGAATCTGAGTGAAGATGAAAATATCCAAAAATGGCTCTTTGTGACTGAAGAAGACATTAAAGGCTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATGATCCACAGAGAAGATATAGAATAGTTCTTAGGAGCACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAGAAAATTGAGGAGATGAATGTGGTCCAGACACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAACAACAGAAGCAATTATTGGGGAGAGCAGTAGAAACGAAATCGAACCCCAAGCTCAACTGTCCCAGTACAGCAGCATCTGTGATGTGCATGGTTCAAACGAGTTTCCTGGTGGAATGATGAAGATTATGCCTTCAGAAATTGATAATGATGCGGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATAATATTGTATGGGATCAGTCAGATATGGTTCCTCATGACTTTATAATATCTGATGTTAGTGCCCAAAGGCCAAGACCAGTAAGCCCACATTCAGAGAGGGGCGGAGTGCCTTCTGATGTTAACTTAAGACAAAGGTGA 1506 43.36 MQILLNFHAISIFLLQIHCVSFLLFLGFSMRGGGSRAPNRSEPLPHTQPAQILPPLKRQLAFELSRPPFVPPGDYYHFGGGSSNALDQQPDAIVVKPLKPKQKGAMYNHVVESSDCIHDQSSSKDALSFVQTPVSAKGGRVYNKAKTPRRATSGPGTPISDTSTYSPLTPAGNCRHDSSLGLLTKKFINLIKQARDGILDLNKAAETLKVQKRRIYDITNVLEGIGLIEKKLKNIICWKGFNAQSPGNVDSDTAMLQVDVENLSFEERRLEDKISALQERLRNLSEDENIQKWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDDPQRRYRIVLRSTMGPIDVYLVSQFEEKIEEMNVVQTPSSFLHASSSGSNEHLTTEAIIGESSRNEIEPQAQLSQYSSICDVHGSNEFPGGMMKIMPSEIDNDADYWLLSDAEVSITDMWRTDNIVWDQSDMVPHDFIISDVSAQRPRPVSPHSERGGVPSDVNLRQR 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4261540 4268747 - Cp4.1LG19g04770.1 Cpe19g00497 485905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00497 501 SMART E2F_TDP_2 175 240 IPR003316 GO:0005667|GO:0006355
Cpe19g00497 501 SUPERFAMILY E2F-DP heterodimerization region 254 357 IPR037241 -
Cpe19g00497 501 MobiDBLite consensus disorder prediction 153 170 - -
Cpe19g00497 501 SUPERFAMILY Winged helix DNA-binding domain 175 238 IPR036390 -
Cpe19g00497 501 CDD E2F_DD 256 357 IPR032198 GO:0046983
Cpe19g00497 501 Gene3D - 169 243 IPR036388 -
Cpe19g00497 501 PANTHER TRANSCRIPTION FACTOR E2FB 53 483 - -
Cpe19g00497 501 Pfam E2F/DP family winged-helix DNA-binding domain 177 240 IPR003316 GO:0005667|GO:0006355
Cpe19g00497 501 MobiDBLite consensus disorder prediction 477 501 - -
Cpe19g00497 501 PANTHER TRANSCRIPTION FACTOR E2F 53 483 IPR015633 GO:0000978|GO:0006357
Cpe19g00497 501 MobiDBLite consensus disorder prediction 140 170 - -
Cpe19g00497 501 Pfam E2F transcription factor CC-MB domain 256 356 IPR032198 GO:0046983
Cpe19g00497 501 Coils Coil 260 287 - -
Cpe19g00497 501 Gene3D - 247 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00497 K06620 E2F3; transcription factor E2F3 - csv:101212480 694.886
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00310 Cpe19g00497 CCT
Cpe10g00310 Cpe19g00497 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00446 Cpe-Chr5:2557752 Cpe19g00497 Cpe-Chr19:4261540 8.98E-152 dispersed
Cpe16g00820 Cpe-Chr16:7906566 Cpe19g00497 Cpe-Chr19:4261540 5.81E-151 dispersed
Cpe18g00824 Cpe-Chr18:7638013 Cpe19g00497 Cpe-Chr19:4261540 5.49E-06 dispersed
Cpe19g00497 Cpe-Chr19:4261540 Cpe20g00223 Cpe-Chr20:1263022 4.24E-12 dispersed
Cpe10g00310 Cpe-Chr10:1803394 Cpe19g00497 Cpe-Chr19:4261540 0 wgd
Cpe19g00497 Cpe-Chr19:4261540 Cpe05g00398 Cpe-Chr5:2254187 2.09E-137 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe09g01047 CCT,CST 3 375 E2F-DP Transcription Factor Family AT3G48160 55.0 4.5e-103 372.1
Cpe20g00223 CCT 3 200 E2F-DP Transcription Factor Family AT3G48160 61.3 1.4e-59 227.6
Cpe20g00223 CCT 21 200 E2F-DP Transcription Factor Family AT3G01330 54.4 6.8e-47 185.3
Cpe01g00344 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.3e-59 227.3
Cpe05g00446 . 21 424 E2F-DP Transcription Factor Family AT2G36010 52.8 1.6e-110 397.1
Cpe10g00310 CCT,ECH 45 476 E2F-DP Transcription Factor Family AT2G36010 53.0 3.5e-110 396.0
Cpe19g00497 CCT,ECH 41 480 E2F-DP Transcription Factor Family AT2G36010 52.2 1.7e-109 393.7
Cpe05g00398 CCT,ECH 3 371 E2F-DP Transcription Factor Family AT2G36010 54.7 3.5e-102 369.4
Cpe05g00446 . 24 431 E2F-DP Transcription Factor Family AT5G22220 53.7 1.8e-103 373.6
Cpe05g00398 CCT,ECH 33 378 E2F-DP Transcription Factor Family AT5G22220 59.3 8.6e-98 354.8
Cpe07g00370 CCT 157 354 E2F-DP Transcription Factor Family AT5G22220 54.0 2.5e-49 193.7
Cpe11g00250 CCT 156 411 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Cpe05g00398 CCT,ECH 77 345 E2F-DP Transcription Factor Family AT1G47870 51.7 1.9e-61 233.8
Cpe07g00370 CCT 153 354 E2F-DP Transcription Factor Family AT1G47870 59.4 7.3e-58 221.9
Cpe01g00344 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.3e-59 227.3
Cpe05g00446 . 24 431 E2F-DP Transcription Factor Family AT5G22220 53.7 1.8e-103 373.6
Cpe05g00398 CCT,ECH 33 378 E2F-DP Transcription Factor Family AT5G22220 59.3 8.6e-98 354.8
Cpe07g00370 CCT 157 354 E2F-DP Transcription Factor Family AT5G22220 54.0 2.5e-49 193.7
Cpe05g00446 . 21 424 E2F-DP Transcription Factor Family AT2G36010 52.8 1.6e-110 397.1
Cpe10g00310 CCT,ECH 45 476 E2F-DP Transcription Factor Family AT2G36010 53.0 3.5e-110 396.0
Cpe19g00497 CCT,ECH 41 480 E2F-DP Transcription Factor Family AT2G36010 52.2 1.7e-109 393.7
Cpe05g00398 CCT,ECH 3 371 E2F-DP Transcription Factor Family AT2G36010 54.7 3.5e-102 369.4
Cpe11g00250 CCT 156 411 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Cpe05g00398 CCT,ECH 77 345 E2F-DP Transcription Factor Family AT1G47870 51.7 1.9e-61 233.8
Cpe07g00370 CCT 153 354 E2F-DP Transcription Factor Family AT1G47870 59.4 7.3e-58 221.9
Cpe20g00223 CCT 21 200 E2F-DP Transcription Factor Family AT3G01330 54.4 6.8e-47 185.3
Cpe09g01047 CCT,CST 3 375 E2F-DP Transcription Factor Family AT3G48160 55.0 4.5e-103 372.1
Cpe20g00223 CCT 3 200 E2F-DP Transcription Factor Family AT3G48160 61.3 1.4e-59 227.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50984 PF16421 E2F_CC-MB 2.00E-31 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00497 Cpe_Chr19 FPKM 7.818839 8.666999 11.69335 10.893708 13.320765 13.041753 13.275755 9.566237 10.387315 9.621719