Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00497 ATGCAAATACTTCTCAACTTTCATGCCATTTCCATCTTCCTTCTGCAAATCCACTGTGTTTCATTTCTCTTGTTCCTTGGATTCTCCATGCGTGGCGGCGGCTCTCGAGCTCCGAACAGGTCGGAGCCACTGCCGCACACCCAACCTGCTCAGATCCTGCCGCCTCTCAAGCGGCAGCTTGCTTTCGAGTTGTCTAGGCCGCCGTTCGTTCCTCCGGGTGACTATTACCACTTTGGCGGTGGTTCTTCCAATGCTCTTGATCAACAGCCTGATGCTATCGTCGTTAAACCTCTCAAACCAAAACAGAAGGGGGCCATGTATAACCATGTGGTTGAATCTAGTGACTGCATTCATGATCAGAGTTCTTCAAAAGATGCTCTAAGTTTTGTACAGACACCTGTATCTGCAAAAGGCGGAAGGGTATACAATAAGGCAAAGACTCCAAGAAGAGCTACGTCTGGGCCTGGAACACCTATCTCAGACACTAGCACTTATTCTCCTCTTACCCCAGCTGGAAACTGTCGACATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACCTTGAAGGTGCAGAAAAGGAGAATATATGACATTACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATGTTGGAAGGGATTCAATGCCCAAAGTCCAGGAAATGTGGATAGTGATACTGCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGAAGATAAGATAAGCGCATTGCAGGAAAGACTGAGGAATCTGAGTGAAGATGAAAATATCCAAAAATGGCTCTTTGTGACTGAAGAAGACATTAAAGGCTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATGATCCACAGAGAAGATATAGAATAGTTCTTAGGAGCACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAGAAAATTGAGGAGATGAATGTGGTCCAGACACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAACAACAGAAGCAATTATTGGGGAGAGCAGTAGAAACGAAATCGAACCCCAAGCTCAACTGTCCCAGTACAGCAGCATCTGTGATGTGCATGGTTCAAACGAGTTTCCTGGTGGAATGATGAAGATTATGCCTTCAGAAATTGATAATGATGCGGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATAATATTGTATGGGATCAGTCAGATATGGTTCCTCATGACTTTATAATATCTGATGTTAGTGCCCAAAGGCCAAGACCAGTAAGCCCACATTCAGAGAGGGGCGGAGTGCCTTCTGATGTTAACTTAAGACAAAGGTGA 1506 43.36 MQILLNFHAISIFLLQIHCVSFLLFLGFSMRGGGSRAPNRSEPLPHTQPAQILPPLKRQLAFELSRPPFVPPGDYYHFGGGSSNALDQQPDAIVVKPLKPKQKGAMYNHVVESSDCIHDQSSSKDALSFVQTPVSAKGGRVYNKAKTPRRATSGPGTPISDTSTYSPLTPAGNCRHDSSLGLLTKKFINLIKQARDGILDLNKAAETLKVQKRRIYDITNVLEGIGLIEKKLKNIICWKGFNAQSPGNVDSDTAMLQVDVENLSFEERRLEDKISALQERLRNLSEDENIQKWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDDPQRRYRIVLRSTMGPIDVYLVSQFEEKIEEMNVVQTPSSFLHASSSGSNEHLTTEAIIGESSRNEIEPQAQLSQYSSICDVHGSNEFPGGMMKIMPSEIDNDADYWLLSDAEVSITDMWRTDNIVWDQSDMVPHDFIISDVSAQRPRPVSPHSERGGVPSDVNLRQR 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4261540 4268747 - Cp4.1LG19g04770.1 Cpe19g00497 485905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00497 501 SMART E2F_TDP_2 175 240 IPR003316 GO:0005667|GO:0006355
Cpe19g00497 501 SUPERFAMILY E2F-DP heterodimerization region 254 357 IPR037241 -
Cpe19g00497 501 MobiDBLite consensus disorder prediction 153 170 - -
Cpe19g00497 501 SUPERFAMILY Winged helix DNA-binding domain 175 238 IPR036390 -
Cpe19g00497 501 CDD E2F_DD 256 357 IPR032198 GO:0046983
Cpe19g00497 501 Gene3D - 169 243 IPR036388 -
Cpe19g00497 501 PANTHER TRANSCRIPTION FACTOR E2FB 53 483 - -
Cpe19g00497 501 Pfam E2F/DP family winged-helix DNA-binding domain 177 240 IPR003316 GO:0005667|GO:0006355
Cpe19g00497 501 MobiDBLite consensus disorder prediction 477 501 - -
Cpe19g00497 501 PANTHER TRANSCRIPTION FACTOR E2F 53 483 IPR015633 GO:0000978|GO:0006357
Cpe19g00497 501 MobiDBLite consensus disorder prediction 140 170 - -
Cpe19g00497 501 Pfam E2F transcription factor CC-MB domain 256 356 IPR032198 GO:0046983
Cpe19g00497 501 Coils Coil 260 287 - -
Cpe19g00497 501 Gene3D - 247 357 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00310 Cpe19g00497 CCT
Cpe10g00310 Cpe19g00497 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00446 Cpe-Chr5:2557752 Cpe19g00497 Cpe-Chr19:4261540 8.98E-152 dispersed
Cpe16g00820 Cpe-Chr16:7906566 Cpe19g00497 Cpe-Chr19:4261540 5.81E-151 dispersed
Cpe18g00824 Cpe-Chr18:7638013 Cpe19g00497 Cpe-Chr19:4261540 5.49E-06 dispersed
Cpe19g00497 Cpe-Chr19:4261540 Cpe20g00223 Cpe-Chr20:1263022 4.24E-12 dispersed
Cpe10g00310 Cpe-Chr10:1803394 Cpe19g00497 Cpe-Chr19:4261540 0 wgd
Cpe19g00497 Cpe-Chr19:4261540 Cpe05g00398 Cpe-Chr5:2254187 2.09E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50984 PF16421 E2F_CC-MB 2.00E-31 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00497 K06620 - csv:101212480 694.886