Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe19g00503 | ATGAATGATTTGTTTTCCTCCGATTCCTTCCGTCGGGATCCGCACCACCACTCCGTCGAGATGGCCCCCGACGTTCCGTCGTCAACGACTATCAATCTCAACAATTTCTTTGAAGATGTCGAGTCCGTGAAAGCGGAATTGGCGGAGCTTGAACGCCTCCATCGAAGCCTCCAGAATTCTCATGAACATAGTAAGACTTTGCATAACTCGAAGGCGATTAAGGATCTTCGATCTCGAATGGAATCAGATTTGACTTTGGCTTTGAAGAAAGCTAGGTTTATCAAGCTTCGATTGGAGGAACTCGACCGGTCCAATATCGAGAATCGAAATCTTCCTGGTTGTGGGTATGGCTCCTCTGCTGACCGGTCTAGAACTTCCGTCGTCAATGGATTGAGGAAGAATCTTTGTGATTCGATGGAGAATTTCAACCGGTTGAGAGAGGAGATCTCGTCGACGTATAAGGAGACAATCGAACGAAGATATTTTACGATTACAGGGGAGAATCCCGATGAGAAGACGATCGATCTCTTGATCTCTACAGGTGAAAGCGAGACATTCCTACAAAAAGCTATACAAAAGCAAGGAAAAGGCAAAGTTCTCGAAACAATCCAAGAGATTCAAGAAAGACACGACGCAGTGAAAGACATTGAGAAGAACCTGAAAGAGCTACACCAAGTGTTCATGGACATGGCGGTACTAGTCCAAACGCAAGGGCAACATTTGGACGACATTGAGAGCCAAGTGACTCGAGCCAACTCAGCCATCAAGCGCGGTGCCACTGAGCTACAAACCGCAAGACACTACCAAAAAAACACGAGAAAATGGATGTGCATAGGCGGTGCTGCTTTTATATTTATCCTCTTCATCATTATTCTTTCTGTCGTCCTCGCCAACAAGAAGTAA | 903 | 45.74 | MNDLFSSDSFRRDPHHHSVEMAPDVPSSTTINLNNFFEDVESVKAELAELERLHRSLQNSHEHSKTLHNSKAIKDLRSRMESDLTLALKKARFIKLRLEELDRSNIENRNLPGCGYGSSADRSRTSVVNGLRKNLCDSMENFNRLREEISSTYKETIERRYFTITGENPDEKTIDLLISTGESETFLQKAIQKQGKGKVLETIQEIQERHDAVKDIEKNLKELHQVFMDMAVLVQTQGQHLDDIESQVTRANSAIKRGATELQTARHYQKNTRKWMCIGGAAFIFILFIIILSVVLANKK | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 4303812 | 4304799 | + | Cp4.1LG19g04810.1 | Cpe19g00503 | 485911 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe19g00503 | 300 | PANTHER | SYNTAXIN | 13 | 294 | IPR045242 | - | |
Cpe19g00503 | 300 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cpe19g00503 | 300 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cpe19g00503 | 300 | CDD | SNARE_syntaxin1-like | 202 | 264 | - | - | |
Cpe19g00503 | 300 | Gene3D | - | 31 | 163 | - | - | |
Cpe19g00503 | 300 | Coils | Coil | 203 | 223 | - | - | |
Cpe19g00503 | 300 | CDD | SynN | 36 | 190 | IPR006011 | GO:0016020 | |
Cpe19g00503 | 300 | Pfam | Syntaxin | 35 | 238 | IPR006011 | GO:0016020 | |
Cpe19g00503 | 300 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - | |
Cpe19g00503 | 300 | Gene3D | - | 192 | 298 | - | - | |
Cpe19g00503 | 300 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - | |
Cpe19g00503 | 300 | ProSitePatterns | Syntaxin / epimorphin family signature. | 209 | 248 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cpe19g00503 | 300 | PANTHER | SYNTAXIN-121 | 13 | 294 | - | - | |
Cpe19g00503 | 300 | SMART | SynN_4 | 28 | 154 | IPR006011 | GO:0016020 | |
Cpe19g00503 | 300 | Coils | Coil | 33 | 60 | - | - | |
Cpe19g00503 | 300 | Pfam | SNARE domain | 241 | 291 | IPR000727 | - | |
Cpe19g00503 | 300 | SUPERFAMILY | t-snare proteins | 32 | 258 | IPR010989 | GO:0016020|GO:0016192 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00938 | Cpe-Chr3:6854115 | Cpe19g00503 | Cpe-Chr19:4303812 | 6.46E-93 | dispersed | |
Cpe09g00868 | Cpe-Chr9:7946431 | Cpe19g00503 | Cpe-Chr19:4303812 | 5.47E-10 | dispersed | |
Cpe19g00503 | Cpe-Chr19:4303812 | Cpe20g00409 | Cpe-Chr20:2339171 | 1.64E-109 | dispersed | |
Cpe19g00503 | Cpe-Chr19:4303812 | Cpe03g00316 | Cpe-Chr3:1660184 | 5.38E-139 | wgd | |
Cpe19g00503 | Cpe-Chr19:4303812 | Cpe08g00962 | Cpe-Chr8:7547582 | 3.12E-134 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe19g00503 | K08486 | - | csv:101213443 | 481.87 |