Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00503 ATGAATGATTTGTTTTCCTCCGATTCCTTCCGTCGGGATCCGCACCACCACTCCGTCGAGATGGCCCCCGACGTTCCGTCGTCAACGACTATCAATCTCAACAATTTCTTTGAAGATGTCGAGTCCGTGAAAGCGGAATTGGCGGAGCTTGAACGCCTCCATCGAAGCCTCCAGAATTCTCATGAACATAGTAAGACTTTGCATAACTCGAAGGCGATTAAGGATCTTCGATCTCGAATGGAATCAGATTTGACTTTGGCTTTGAAGAAAGCTAGGTTTATCAAGCTTCGATTGGAGGAACTCGACCGGTCCAATATCGAGAATCGAAATCTTCCTGGTTGTGGGTATGGCTCCTCTGCTGACCGGTCTAGAACTTCCGTCGTCAATGGATTGAGGAAGAATCTTTGTGATTCGATGGAGAATTTCAACCGGTTGAGAGAGGAGATCTCGTCGACGTATAAGGAGACAATCGAACGAAGATATTTTACGATTACAGGGGAGAATCCCGATGAGAAGACGATCGATCTCTTGATCTCTACAGGTGAAAGCGAGACATTCCTACAAAAAGCTATACAAAAGCAAGGAAAAGGCAAAGTTCTCGAAACAATCCAAGAGATTCAAGAAAGACACGACGCAGTGAAAGACATTGAGAAGAACCTGAAAGAGCTACACCAAGTGTTCATGGACATGGCGGTACTAGTCCAAACGCAAGGGCAACATTTGGACGACATTGAGAGCCAAGTGACTCGAGCCAACTCAGCCATCAAGCGCGGTGCCACTGAGCTACAAACCGCAAGACACTACCAAAAAAACACGAGAAAATGGATGTGCATAGGCGGTGCTGCTTTTATATTTATCCTCTTCATCATTATTCTTTCTGTCGTCCTCGCCAACAAGAAGTAA 903 45.74 MNDLFSSDSFRRDPHHHSVEMAPDVPSSTTINLNNFFEDVESVKAELAELERLHRSLQNSHEHSKTLHNSKAIKDLRSRMESDLTLALKKARFIKLRLEELDRSNIENRNLPGCGYGSSADRSRTSVVNGLRKNLCDSMENFNRLREEISSTYKETIERRYFTITGENPDEKTIDLLISTGESETFLQKAIQKQGKGKVLETIQEIQERHDAVKDIEKNLKELHQVFMDMAVLVQTQGQHLDDIESQVTRANSAIKRGATELQTARHYQKNTRKWMCIGGAAFIFILFIIILSVVLANKK 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4303812 4304799 + Cp4.1LG19g04810.1 Cpe19g00503 485911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00503 300 PANTHER SYNTAXIN 13 294 IPR045242 -
Cpe19g00503 300 MobiDBLite consensus disorder prediction 1 25 - -
Cpe19g00503 300 MobiDBLite consensus disorder prediction 1 20 - -
Cpe19g00503 300 CDD SNARE_syntaxin1-like 202 264 - -
Cpe19g00503 300 Gene3D - 31 163 - -
Cpe19g00503 300 Coils Coil 203 223 - -
Cpe19g00503 300 CDD SynN 36 190 IPR006011 GO:0016020
Cpe19g00503 300 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Cpe19g00503 300 SMART tSNARE_6 198 265 IPR000727 -
Cpe19g00503 300 Gene3D - 192 298 - -
Cpe19g00503 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Cpe19g00503 300 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe19g00503 300 PANTHER SYNTAXIN-121 13 294 - -
Cpe19g00503 300 SMART SynN_4 28 154 IPR006011 GO:0016020
Cpe19g00503 300 Coils Coil 33 60 - -
Cpe19g00503 300 Pfam SNARE domain 241 291 IPR000727 -
Cpe19g00503 300 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00938 Cpe-Chr3:6854115 Cpe19g00503 Cpe-Chr19:4303812 6.46E-93 dispersed
Cpe09g00868 Cpe-Chr9:7946431 Cpe19g00503 Cpe-Chr19:4303812 5.47E-10 dispersed
Cpe19g00503 Cpe-Chr19:4303812 Cpe20g00409 Cpe-Chr20:2339171 1.64E-109 dispersed
Cpe19g00503 Cpe-Chr19:4303812 Cpe03g00316 Cpe-Chr3:1660184 5.38E-139 wgd
Cpe19g00503 Cpe-Chr19:4303812 Cpe08g00962 Cpe-Chr8:7547582 3.12E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00503 K08486 - csv:101213443 481.87