Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00504 ATGAACAACGGCACCGACGACGGCGGCGGATTTCTGTCCTCAGGCAACATCGGCGGAGACGGATATGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGCACCAGAGTCGCCCAATCACCGACCTCCGGGATTCAGAGCAACGCCAATCTCTCGCCGCCGCCGCCGCCTCGGCTGGCGGAGGAGGATGCCGTTGTTGTCGTCGATATCGGAATCGATCAGGAGACGATTAGGAATTTTCCGAAATTGCTGTATTCAGAGGCGAAGATTCAGAACAACGATTCCTCTGCTTCTTGTTGCTCTATCTGTTTGGCCGATTACAAAAACTCCGATGTTCTTCGGATTTTGCCTGATTGCGGTCATTTGTTCCATCTCAAGTGCGTCGATCCGTGGCTGAGGCTTCACCCAACCTGTCCGTTTTGCCGGACCTCGCCTATTCCGACGCCGTTATCGACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGATGGCACGGTTGA 528 53.79 MNNGTDDGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNANLSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLARWHG 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4306471 4306998 + Cp4.1LG19g04800.1 Cpe19g00504 485912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00504 175 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 5 171 - -
Cpe19g00504 175 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 171 IPR045899 -
Cpe19g00504 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 156 IPR013083 -
Cpe19g00504 175 SMART ring_2 110 151 IPR001841 -
Cpe19g00504 175 Pfam Ring finger domain 110 152 IPR001841 -
Cpe19g00504 175 SUPERFAMILY RING/U-box 86 157 - -
Cpe19g00504 175 CDD RING-H2_PA-TM-RING 109 152 - -
Cpe19g00504 175 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00504 Cpe-Chr19:4306471 Cpe01g00619 Cpe-Chr1:3570770 1.74E-19 dispersed
Cpe10g00317 Cpe-Chr10:1843894 Cpe19g00504 Cpe-Chr19:4306471 3.97E-87 wgd
Cpe19g00504 Cpe-Chr19:4306471 Cpe03g00321 Cpe-Chr3:1681697 2.11E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00504 - - cpep:111782200 313.153