Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00507 ATGAAAACTTTTAAGGGGAAAGATTTGATAAAATATCGCAAAGCTGTCTTCAAAAGTGGCGGGAACCCTACTCCTCTTCCGCGTCTGCCATTCCACTTCCATTTTCTGAGTTCACTCTCTTCCACAAAAACCAGAGCCATGAACAAGGGCAGCGGTCGGAAAATTCGACCACCGCCTCAGAACCCTTCGCCGGCTCCACCGGCCAAGCACCAGGCACTGTCTCAAGAAGAAGATTTTGTCGATGAAGATGTTTTCCTCGACGAGAATCTTCTCGACGAGGACGCTCTCATCCTCCGCGACATTGAGGAGCGTCAGGCCCTCGCTTCTCGTCTCTCTAAATGGACTCGTCCACCTCTTTCCCAGGAGTACGTCTCCCAGTCGAAGAGCATTGTGTTTCAGCAATTGGAAATTGATTATGTGATTGGGGAAAGTCACAGAGAATTGTTGCCGAATTTGTCTGGCCCTGCCGCTATTCTAAGAATTTTCGGGGTTACGAGGGAAGGACATAGTGTTTGCTGCCATGTTCATGGATTTGAACCATACTTCTATATCAGTTGCCCTCCAGGAATGGGTCCTGATGATATCTCTCTTTTTCACCAAACACTTGAGACTAGAATGAAGGAGATGAATAGGAACAGTAAGGCACCTAGTTTCGTGCGCCGTATTGAATTGGTGCAAAAGCGAAGTATTATGTACTACCAGCAGCAAACTTCTCAATCCTTTCTTAAAATTGTTGTTGCACTGCCAACAATGGTCGCCAGCTGCCGTGGTATTCTTGACAGGGGCATACAAATCGATGGCTTTGGTATGAAGAGCTTCATGACATATGAAAGCAATGTGCTATTTGCCCTCCGTTTTATGATTGATTGTAATGTTGTGGGTGGAAACTGGATTGAGGTTCCTGTGGGAAAATATAAGAAAACTGTTAGAAATTTATCATATTGCCAATTGGAGTTTGATTGCCTATATTCAGACTTGATCAGCCATGCCCCCGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATCTTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCTGAGCCTACCAAGGATCCTGTAATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGGACCAACCATTTATTCGCAATGTCATGACCCTTAACTCTTGCTCTCCTATTGCGGGCGTTGATGTCTTATCATTTGATACAGAACGTGAAGTTTTGCTGGCTTGGAGGGATCTAATTCGTGAAGTAGACCCTGATATAATAATTGGATATAACATCTGCAAATTTGATTTGCCATATCTAATAGAGAGAGCTGAGGCACTGAAAATAGCAGAATTTCCAATATTGGGTCGGATCAGGAATAGCAAAGTTCGTGTTAAAGATACAACTTTTTCTTCAAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTCCAATTTGATTTACTTCAGGCAATGCAACGAGATTATAAATTAAGTTCATACTCGTTGAATTCTGTTTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCAGATCTTCAAAATGGTAATGCAGAAACACGTAGACGGCTGGCTGTTTATTGTTTAAAGGATGCATATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCTATTTCGTTTCTTCTTTCAAGAGGGCAAAGCATCAAGGTGCTCTCTCAACTCCTTAGGAAGGCAAAACAAAAGAACCTCGTTATTCCGAATGCTAAACAGGCAGGATCTGATCAAGGAACCTATGAGGGTGCTACTGTTTTGGAAGCAAGGGCTGGGTTCTATGAGAAGCCCATTGCCACGCTGGATTTTGCATCTCTGTATCCATCCATCATGATGGCATATAATTTATGTTATTGCACTCTGGTGACTCCAGAAGACGTTCGCAAGCTAAATCTGCCCCCTGAACATTTCAATAAAACCCCCTCTGGTGAGATATTTGTCAAGCCAAATCTACAGAAGGGGATACTTCCTGAAATATTAGAGGAATTATTGACCGCTCGGAAAAGAGCAAAAGCAGATTTGAAGGAGGCAAAGGATCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGCTAGCTCTGAAGATAAGTGCAAATTCTGTGTATGGGTTTACAGGAGCTACTGTTGGTCAGTTACCGTGTCTAGAGATATCTTCAAGTGTTACAAGCTATGGCCGACAAATGATTGAGCACACAAAGAAACTTGTGGAAGATAAATTTACAACTCTTGGGGGCTACGAGCACAATGCTGAGGTAATCTATGGTGATACAGATTCAGTAATGGTACAATTTGGTGTGCCCAGTGTAGAAGCAGCGATGATCTTGGGAAGGGAAGCAGCTGATTATATCAGTGGTACTTTCACAAAACCCATCAAGTTAGAGTTTGAGAAAGTTTATTACCCATATCTGTTGATTAGTAAGAAGAGATACGCTGGTTTATTTTGGACTAATCCAAACAAGTTTGACAAGATGGATACCAAAGGCATTGAGACAGTTCGAAGAGATAATTGTTTATTGGTGAAAAACCTTGTAAATGAGTGCTTGCACAGAATTCTTATTGATAGAGATGTCCCTGGGGCAGTTCAATATGTGAAGAACACGATTTCAGATCTACTTATGAACCGTGTGGATTTATCTCTCTTGGTTATCACTAAGGGACTGACAAAAACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGTGATCGAGTACCTTACGTGATCATTAAAGCTGCAAAAGGTGCCAAGGCATATGAGAAATCAGAGGATCCCATTTACGTACTAGAGAATAGCATACCAATAGACCCTCAGTACTATCTCGAGAATCAGATGAGCAAGCCTCTTCTACGAATTTTTGAGCCCATCCTGAAAAATGCTAGCAAGGAACTTCTACATGGAAGTCACACGAGATCAATTTTTATTTCTACTCCTTCAAACAGTGGCATAATGAAATTTGCCAAGAAACAGCTTACCTGCATTGGCTGTAAGGCTCTGCTAAGCAAGGCAGACCATACTCTCTGCGCACACTGCAAAGGAAGAGAAGCTGAACTTTACTGCAAAGCGTGTCTGATTTGGAGATGGTTTTTGGAAGGCTTTGGACGCAGTGCCAAGAATGCCAAGGGTCCCTTCACCAAGATGTTCTCTGTACGAGTCGAGACTGTCCAATATTTTATCGAAGAAAGAAGGCACAAAAAGACATGGCTGAAGCTAAACAGCTTTTGGAACGTTGGAATTTCTAATACCGTTGAAAGGTATTGA 3408 42.52 MKTFKGKDLIKYRKAVFKSGGNPTPLPRLPFHFHFLSSLSSTKTRAMNKGSGRKIRPPPQNPSPAPPAKHQALSQEEDFVDEDVFLDENLLDEDALILRDIEERQALASRLSKWTRPPLSQEYVSQSKSIVFQQLEIDYVIGESHRELLPNLSGPAAILRIFGVTREGHSVCCHVHGFEPYFYISCPPGMGPDDISLFHQTLETRMKEMNRNSKAPSFVRRIELVQKRSIMYYQQQTSQSFLKIVVALPTMVASCRGILDRGIQIDGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRNLSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTKDPVIQVANLVTLQGEDQPFIRNVMTLNSCSPIAGVDVLSFDTEREVLLAWRDLIREVDPDIIIGYNICKFDLPYLIERAEALKIAEFPILGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQAMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPEHFNKTPSGEIFVKPNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMILGREAADYISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHRILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENSIPIDPQYYLENQMSKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNSGIMKFAKKQLTCIGCKALLSKADHTLCAHCKGREAELYCKACLIWRWFLEGFGRSAKNAKGPFTKMFSVRVETVQYFIEERRHKKTWLKLNSFWNVGISNTVERY 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4315970 4332583 - Cp4.1LG19g04780.1 Cpe19g00507 485915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00507 1135 Pfam DNA polymerase family B, exonuclease domain 165 508 IPR006133 -
Cpe19g00507 1135 SUPERFAMILY Ribonuclease H-like 156 578 IPR012337 -
Cpe19g00507 1135 SMART polmehr3 339 798 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cpe19g00507 1135 ProSitePatterns DNA polymerase family B signature. 786 794 IPR017964 GO:0000166|GO:0003676
Cpe19g00507 1135 Gene3D DNA Polymerase, chain B, domain 1 135 312 - -
Cpe19g00507 1135 PRINTS DNA-directed DNA-polymerase family B signature 784 792 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cpe19g00507 1135 PRINTS DNA-directed DNA-polymerase family B signature 631 644 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cpe19g00507 1135 PRINTS DNA-directed DNA-polymerase family B signature 723 735 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cpe19g00507 1135 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 128 1071 - -
Cpe19g00507 1135 Gene3D - 340 558 IPR036397 GO:0003676
Cpe19g00507 1135 SUPERFAMILY DNA/RNA polymerases 597 1007 IPR043502 -
Cpe19g00507 1135 Gene3D Helix hairpin bin 687 739 - -
Cpe19g00507 1135 Pfam DNA polymerase family B 572 1005 IPR006134 GO:0000166|GO:0003677
Cpe19g00507 1135 MobiDBLite consensus disorder prediction 46 74 - -
Cpe19g00507 1135 CDD POLBc_delta 613 1006 - -
Cpe19g00507 1135 Gene3D Palm domain of DNA polymerase 613 843 IPR023211 -
Cpe19g00507 1135 TIGRFAM pol2: DNA polymerase (pol2) 398 1003 - -
Cpe19g00507 1135 CDD DNA_polB_delta_exo 336 564 - -
Cpe19g00507 1135 Gene3D - 860 1015 IPR042087 -
Cpe19g00507 1135 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 128 1071 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01165 Cpe-Chr5:7937100 Cpe19g00507 Cpe-Chr19:4315970 1.55E-44 dispersed
Cpe11g00906 Cpe-Chr11:7407780 Cpe19g00507 Cpe-Chr19:4315970 2.05E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00507 K02327 - csv:101219332 1948.33