Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00508 ATGGCGGCTTCAGGGTTGCTTATGTTTCATCTCCCTCGCCTCGCCCGCCATTTTCCGTTCCTTCATCCATTCAATCCGTCCGTTTCTTTACACAGCCTTGTATTTCGCCGGAAACTACCGCCTCACCGCCCCGTCCTCTTCCGCCGCAATTGCACATATAGGAGGTCGTTTGTTACTGCCAGTTCAAGTTCTCAAGACTGGAGAAATGGCGTTGGCGCCGTCGATGAAAGGTATGATGTTATAGTTGTGGGAGGTGGACATGCAGGTTGTGAAGCTGCTCTTGCATCTGCTCGTTTAGGGGCTAAAACTCTTCTTCTGACACTCAATATCGATCGAATTGCTTGGCAGGTTGGGATTCAAGCTATTATATTGATCATTTCAGTCTTAATGCGAGTTGGTGGGCCTGCAAAATCTCAACTTGTGCATGAAGTTGATGCACTCGGTGGTGAAATTGGTAAGGTCGCTGACAGGTGCTATCTACAAAAGCGTGTACTCAATATCTCTAGAGGTCCTGCTGTACGGGCATTGCGTGCTCAAACGGATAAAAGGGAGTATGCACTTCAAATGAAAAGTATTGTGGAAAGGCAATTACAAGTAGCCAACAAAGTTATTTACAAATTTGGGTATAGCCGGAGTAGAACTGTGAAGCAAAGCACACAGAATCTTTCTATTAGAGAGGCAATGGTGACAGATATTTTATTAGGAAAGAATGACAATGTGGAAGGTGTTTGCACCTTTTTTGGAATGAACTTCTACGCACCTGCAGTTATTCTCACTACAGGAACGTTCATGAGTGGTAAAATATGGGTTGGTAGAACTTCCATGCCTGCAGGAAGAGCTGGTGAATCAGCTTCACATGGACTCACTGAAAACCTACAACGTCTTGGATTTGAAAGTGATCGGTTGAAAACAGGAACCCCAGCCCGGGTGGATTGTCGAACTGTTGACTTTTCTACACTGGAACCTCAACATGGTGATGATGAGGTCAATTGGTTTAGTTTCGATCCTGATTGTCACATTGAGAGAGAGCAAATGTGCTGCTATCTGACTCGCACTACAAAAAGTACACATGAACTTATCAAGGAGAATCTGCATGAAACTCCCACTTACGGAGGCTGGGTGGAAGCAAAAGGGCCTAGATACTGCCCTTCAATTGAAGATAAGGGATTTTCTACTGGTTTGCCAGAACGACTACAGTTGCCACTTTTGAGAACTTTACCAGGCCTTGAGAACTGTTCAATGCTTCGACCTGCATATGCTGTGGAGTATGACTTCTTGCCTGCTCATCAATGTAGCAGATCTCTTATGACAAAAAAAGTTGATGGACTTTTCTTCTCTGGTCAAATAAATGGAACCACAGGCTACGAAGAAGCAGCTGCACAAGGAATTATATCTGGTATCAATGCTGCCAGATTTTCAGATGGCAAGTCCCTCATTGTTCTTGAGAGGGAAAGTAGTTATATCGGGACCTTAATCGATGACCTAGTCACAAAAGACCTTCGTGAGCCTTATCGTATGTTGACAAGCCGCTCAGAACATCGCTTACTTCTCCGATCTGACAATGCGGATAGCCGTCTCACACCTCTTGGCCGTGAAATTGGGTTAATAGATGATAGGCGCTGGAAACTATACCAAGAGAAGCAAGCTAGAATATCTGATGAGAAGAAGAGATTGAAAACTGTCAGGATATCAGGAGGAGAGCTGGCTGCTGATATTTCCCGCCAGTCCGGTCAGCCCGTGAAGGACTATTCGACATTGGAGAGTCTTCTTAAGAAACCGCACATAGGATATAATGTTTTCGATAAGCATGGTTTTGGGAATAAGCTCTTAACCAAATCTGAAAAGGATTGTGTAGAGATTGATATCAAATATGAGGGTTTCATTTTACGGCAGCAAACACAACTCCAGCAGATGGTTCATCAACAACATAGAGTACTTCCTGAAGACTTGGATTACTATGCAATGACGACATTGTCCCTCGAGGCCCGTGAGAAACTATCTAAGGTGAGGCCACAAACGATCGGTCAAGCAAGTAGAGTTGGCGGGGTAAGTCCTGCTGATATCACTGCTCTCCTTATCATCCTTGAATCCAATAGAAGGAAAGCTCAGGAAATGAGGCGGCATCAGATGCTCGGTTCTATCATCAGAGAATCTACCGATACAGAAGAACGCCCATCTGGAGCGAATTTAACTGAGGCAATCAGTTCTTGA 2211 44.6 MAASGLLMFHLPRLARHFPFLHPFNPSVSLHSLVFRRKLPPHRPVLFRRNCTYRRSFVTASSSSQDWRNGVGAVDERYDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDRIAWQVGIQAIILIISVLMRVGGPAKSQLVHEVDALGGEIGKVADRCYLQKRVLNISRGPAVRALRAQTDKREYALQMKSIVERQLQVANKVIYKFGYSRSRTVKQSTQNLSIREAMVTDILLGKNDNVEGVCTFFGMNFYAPAVILTTGTFMSGKIWVGRTSMPAGRAGESASHGLTENLQRLGFESDRLKTGTPARVDCRTVDFSTLEPQHGDDEVNWFSFDPDCHIEREQMCCYLTRTTKSTHELIKENLHETPTYGGWVEAKGPRYCPSIEDKGFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEYDFLPAHQCSRSLMTKKVDGLFFSGQINGTTGYEEAAAQGIISGINAARFSDGKSLIVLERESSYIGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWKLYQEKQARISDEKKRLKTVRISGGELAADISRQSGQPVKDYSTLESLLKKPHIGYNVFDKHGFGNKLLTKSEKDCVEIDIKYEGFILRQQTQLQQMVHQQHRVLPEDLDYYAMTTLSLEAREKLSKVRPQTIGQASRVGGVSPADITALLIILESNRRKAQEMRRHQMLGSIIRESTDTEERPSGANLTEAISS 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4333833 4344728 + Cp4.1LG19g04830.1 Cpe19g00508 485916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00508 736 Gene3D - 71 332 IPR036188 -
Cpe19g00508 736 Gene3D - 395 536 IPR036188 -
Cpe19g00508 736 Gene3D - 646 696 IPR044920 -
Cpe19g00508 736 PANTHER GLUCOSE INHIBITED DIVISION PROTEIN A 65 388 IPR002218 GO:0008033|GO:0050660
Cpe19g00508 736 PANTHER GLUCOSE INHIBITED DIVISION PROTEIN A 388 702 IPR002218 GO:0008033|GO:0050660
Cpe19g00508 736 SUPERFAMILY FAD/NAD(P)-binding domain 77 365 IPR036188 -
Cpe19g00508 736 MobiDBLite consensus disorder prediction 716 736 - -
Cpe19g00508 736 SMART GIDA_assoc_3_2 622 693 - -
Cpe19g00508 736 Pfam Glucose inhibited division protein A 79 388 IPR040131 -
Cpe19g00508 736 Pfam tRNA modifying enzyme MnmG/GidA C-terminal domain 480 692 IPR026904 -
Cpe19g00508 736 Gene3D - 537 626 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00508 K03495 gidA, mnmG, MTO1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme - csv:101219572 1259.97
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1333 . . Bda04g00384 . . . Bma09g00435 . . . . Cma07g00816 . Car07g00803 . Cpe19g00508 . . . . . . . . Cla01g01487 Cam01g1554 Cec04g1200 Cco04g1268 Clacu01g1580 Cmu01g1469 Cre04g1150 . . Cone6ag1261 . Lsi01g01174 . . Cme08g01141 . . . . . . . . . . Cmo07g00845 . . . . . . . . . . . . . . . . . . . . . Csa06g02736 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008582 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00508 Cpe_Chr19 FPKM 4.089276 5.29965 15.520372 16.145147 129.082932 140.786301 135.074738 19.655771 22.121674 21.964235