Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00512 ATGGATTCCGCCGCAGCAACCACCGCAATTCTGACCAACATGCTTCACAACGCCGCCACCGCCGCCGCCACCACCACCACCACCAATCTCCCAACGGAATTCCTCTGGCCACACGCCGACTTAGCCACAAATGCCGACGACCCAGAAGAGCTTCAAGAGCCATTAATCGATTTATCCGGGTTCCGGCGAGGGGACGCGGCGGCGACAGCGGAAGCCGCCGCTCTAATCCGTCAAGCGTGTAGGAACCATGGGTTCTTCCAAGTGACGAACCATGGCATGGACCCAGATCTAATAAACGCCGCATACGAGCATGTGGAGACCATTTTCAATATGCCTTTAGTCAAGAAAATTAGTGTCCGAAAGAAGCCTGGAAGGGTGTCTGGATATTCAGGGGCCCATGCAGAGCGATTCTCCTCTAAATTGCCATGGAAAGAGACGTTTTCTTTTGAGTATTGTAGCGATGATTCTGAATGGCCTGATGTTCTTCATTATTTCAAGTCCTTATTGGGTCGCGAATTCGAGAAAACAGGATGGGTGTACCAGAGGTACTGCGAGGAGATGAAAAGAATTGGGCTAATGATAATGGAGCTTTTGGCTATAAGTTTGGGAGTTGAAAGACGGCATTATAGGGAGTTTTTTGAAGATGGGAGGTCAATAATGAGGTGTAATTATTACCCACCGTGTGAGAATGCAGGGCTGACGCTAGGGACTGGGCCGCACTGTGACCCGACGTCTCTAACAATTCTGCACCAAGACCAAGTTGGTGGCCTTCAGGTTTTTGCTAATAATAGATGGCTTTCTGTCAAGCCACGACCGGATGCTTTGGTTATTAATATTGGTGACACCTTCATGGCACTATCGAACGGGGCGTACAAGAGCTGCCTGCATAGGGCAGTGGTGAACAGGAAGAGAGAAAGGAGGTCACTGGCGTTCTTCGTGTGCCCAAAAGATGATAAAGTGGTGAGACCCCCACAAGATTTGGTGGGCAGAGAAGGGCCAAGAAAGTACCCTGATTTTACATGGTCAGATCTTTTGGACTTTACACAAAACCATTATAGAGCTGATGTTGCTACACTCCAAAGCTTTGTTCATTGGCTTCGACCCTCCCATACCCGTTCCTTTTAA 1125 49.16 MDSAAATTAILTNMLHNAATAAATTTTTNLPTEFLWPHADLATNADDPEELQEPLIDLSGFRRGDAAATAEAAALIRQACRNHGFFQVTNHGMDPDLINAAYEHVETIFNMPLVKKISVRKKPGRVSGYSGAHAERFSSKLPWKETFSFEYCSDDSEWPDVLHYFKSLLGREFEKTGWVYQRYCEEMKRIGLMIMELLAISLGVERRHYREFFEDGRSIMRCNYYPPCENAGLTLGTGPHCDPTSLTILHQDQVGGLQVFANNRWLSVKPRPDALVINIGDTFMALSNGAYKSCLHRAVVNRKRERRSLAFFVCPKDDKVVRPPQDLVGREGPRKYPDFTWSDLLDFTQNHYRADVATLQSFVHWLRPSHTRSF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4367343 4369830 + Cp4.1LG19g04700.1 Cpe19g00512 485920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00512 374 PRINTS Isopenicillin N synthase signature 76 93 - -
Cpe19g00512 374 PRINTS Isopenicillin N synthase signature 240 261 - -
Cpe19g00512 374 PRINTS Isopenicillin N synthase signature 303 321 - -
Cpe19g00512 374 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 216 315 IPR005123 -
Cpe19g00512 374 Pfam 2OG-Fe(II) oxygenase superfamily 218 315 IPR044861 -
Cpe19g00512 374 SUPERFAMILY Clavaminate synthase-like 23 354 - -
Cpe19g00512 374 Pfam non-haem dioxygenase in morphine synthesis N-terminal 54 154 IPR026992 -
Cpe19g00512 374 Gene3D - 18 352 IPR027443 -
Cpe19g00512 374 PANTHER GIBBERELLIN 20 OXIDASE 1-B-LIKE 23 369 - -
Cpe19g00512 374 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 23 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00512 K05282 GA20ox; gibberellin-44 dioxygenase [EC:1.14.11.12] - csv:101214165 579.326
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00323 Cpe19g00512 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00002 Cpe-Chr12:8040 Cpe19g00512 Cpe-Chr19:4367343 7.38E-128 dispersed
Cpe13g00058 Cpe-Chr13:457012 Cpe19g00512 Cpe-Chr19:4367343 5.10E-136 dispersed
Cpe13g00649 Cpe-Chr13:6175899 Cpe19g00512 Cpe-Chr19:4367343 4.14E-126 transposed
Cpe10g00323 Cpe-Chr10:1879334 Cpe19g00512 Cpe-Chr19:4367343 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1330 . . . . . . . . . . Cma03g01109 Cma07g00811 Car03g01002 Car07g00798 . Cpe19g00512 Cpe10g00323 . . . . . . . Cla01g01490 Cam01g1558 Cec04g1205 Cco04g1272 Clacu01g1584 Cmu01g1473 Cre04g1154 . . Cone6ag1263 . Lsi01g01170 . . Cme08g01138 . . . . . . . . . Cmo03g01099 Cmo07g00841 . . . . . . . . . . . . . . . . . . . . . Csa06g02740 Chy02g01095 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007963 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 1 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00512 Cpe_Chr19 FPKM 8.272274 10.00618 24.333414 24.434322 26.037012 28.974119 28.264883 11.665429 12.420978 12.335603