Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe19g00524 | ATGGCGACCATGAATTCCAGCGTCTTGGCCTGCAACTACGCCATTTCAGGTGCTGGATCCGCCGAGCTTAACTCGAAACTCAGCGCCGTGACTTCTGTTGCGTCGCCTGGGGTTTCTGGTTACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCTAAGAATGAAGGAAGGAGAACTGCGCTTCTTTTCCTTGGAGCTTCCCTCTTTGCTGCGGCTGCTGCTTCCTCCAACTCTTCGGCTAATGCTGGAGTCATTGAAGAGTACCTTGAGAAGAGTAAAGCTAACAAGGAACTGAATGACAAGAAAAGATTAGCAACAAGTGGAGCAAACTTTGCAAGGGCATACACTGTTCAGTTTGGATCATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAACAAAAGAAAGTCCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA | 516 | 47.87 | MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRAQQARVPEAKNEGRRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW | 171 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 4454144 | 4458860 | + | Cp4.1LG19g12170.1 | Cpe19g00524 | 485932 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe19g00524 | 171 | Gene3D | - | 87 | 171 | IPR044907 | - | |
| Cpe19g00524 | 171 | PANTHER | PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC | 1 | 171 | IPR008796 | GO:0009522|GO:0015979 | |
| Cpe19g00524 | 171 | Pfam | Photosystem I reaction centre subunit N (PSAN or PSI-N) | 44 | 171 | IPR008796 | GO:0009522|GO:0015979 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe10g00333 | Cpe-Chr10:1941409 | Cpe19g00524 | Cpe-Chr19:4454144 | 6.42E-107 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe19g00524 | K02701 | - | csv:101204396 | 293.893 |