Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00534 ATGGACCCCCATCACCTCCCAAACCCCTCTTCCCATCTCCAATTTTCCGCCATCGATGATCCCGGCATCGTTCACCTTCACCATGTTCACGAGCTCAATTCCATTTGGCCGTCGTTGTTGTTGCCTCATCAACCGCTCCCTACCTCATCCACCCACCTGATGTCAGGCTACGGTAATGATCAAGAAGAGCCAGAAGAAGAGCTTGGTGCTATGAAGGAGATGATGTACAAGATCGCCGCGATGCAGCCAGTCGATATCGACCCATCAACTATTCGAAAACCCAAGAGACGAAACGTTCGAATTAGCGACGACCCACAAAGCATTGCCGCTCGTCTTCGTCGAGAAAGAATCAGCGAAAAGATCAGAATTCTTCAAAGGCTCGTCCCCGGAGGAACAAAGATGGATACAGCTTCAATGCTAGATGAAGCCATTAGGTATGTCAAGTTCTTGAAAAGACAAATCCAATTTCTTCAGTCAACTCAGCCGAGCACCGGCGACGACGCAGTCGTCGGAGGGTGGCCATTTCCATTCCATAAGGCTAATACTTCAAACTCCTCGTCCACTTCCATGGAAGCTACTCCAACCATTATGCCATCAGGATGGTGA 606 49.5 MDPHHLPNPSSHLQFSAIDDPGIVHLHHVHELNSIWPSLLLPHQPLPTSSTHLMSGYGNDQEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIQFLQSTQPSTGDDAVVGGWPFPFHKANTSNSSSTSMEATPTIMPSGW 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4530320 4533018 - Cp4.1LG19g11930.1 Cpe19g00534 485942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00534 201 Pfam Helix-loop-helix DNA-binding domain 110 150 IPR011598 GO:0046983
Cpe19g00534 201 MobiDBLite consensus disorder prediction 182 201 - -
Cpe19g00534 201 SMART finulus 107 156 IPR011598 GO:0046983
Cpe19g00534 201 CDD bHLH_AtIND_like 102 159 - -
Cpe19g00534 201 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 26 191 IPR045843 GO:0003700|GO:0006355
Cpe19g00534 201 Gene3D - 104 166 IPR036638 GO:0046983
Cpe19g00534 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 150 IPR011598 GO:0046983
Cpe19g00534 201 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 26 191 - -
Cpe19g00534 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 159 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00343 Cpe19g00534 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01084 Cpe-Chr3:8961850 Cpe19g00534 Cpe-Chr19:4530320 5.92E-34 dispersed
Cpe05g01108 Cpe-Chr5:7447488 Cpe19g00534 Cpe-Chr19:4530320 1.34E-46 dispersed
Cpe06g00164 Cpe-Chr6:898190 Cpe19g00534 Cpe-Chr19:4530320 2.06E-48 dispersed
Cpe11g00147 Cpe-Chr11:809628 Cpe19g00534 Cpe-Chr19:4530320 1.87E-48 dispersed
Cpe12g00638 Cpe-Chr12:6249699 Cpe19g00534 Cpe-Chr19:4530320 1.66E-38 dispersed
Cpe17g00518 Cpe-Chr17:4328574 Cpe19g00534 Cpe-Chr19:4530320 4.81E-40 dispersed
Cpe19g00262 Cpe-Chr19:2200164 Cpe19g00534 Cpe-Chr19:4530320 4.61E-23 dispersed
Cpe10g00343 Cpe-Chr10:1998127 Cpe19g00534 Cpe-Chr19:4530320 4.89E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50987 PF00010 HLH 1.10E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00534 - - csv:101222266 298.516