Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00539 ATGGTGAGAGATGACTTGTGTATTACAATTCCGAGCGATTTCAGATGTCCGATCTCGCTTGACGTCATGAAATCCCCTGTAAGTTTGTGTACCGGAGTTACTTACGATCGTTCCAGTATCCAGAAATGGCTCGACAATGGAAACAATACTTGTCCGGCTACCATGCAGATCCTTCAAACTAAGGAGTTCGTCCCTAACCACAATCTCCACCGCCTTATTCAGATTTGGTCCGATTCTCTTCGGCACCGAGTCCACTCGCCCGATTCCTCCCCTGTTTCCGACTCGGTTCTTTCCTCCGATCAAGTTCTTGACCTCGTCAAGCGCATAGAGATCGATCAGTCTCGCACCGACTCGCTTCTGCGGCTTGTCTCTTTCGCCGCTAAATCGGTGGAGAATCGGAGGCTTCTCTGTGGAATCGGCGGTTTCGTGCCGGTTCTTGTCGATCTTCTTAGCAATGTCAATGGCGGCGTTTTGGTTGAGCAGACTGTGAGGTTATTGCATTTGATTCGAAATGAAATAGAAGATAAGGAGCGGTTTGTGAAATCGATATTGAAGAGCGATCGTAATTGTGTTTCGTCTCTGCTTCTGATTCTGCGGAAAGGAACCGTCGAATTGAAAATCTGTTCAGCTAGTCTACTAGAGCATCTCGCAATCGACGCCGAATCGAAGATTGTAATCGCCGAAACGGATGGATTGATGCAAGAATTACTGAAATTAACAAACTCTGAGAACGATTCAAACCTAATCGAATCGGTTCTATCGTGTTTAATTTCAATTTCAATGCCGAAACGGATCAAAATCAAATTAGTCCATCTCGGAGCGATAAAATCGGTAACGAAGCTTCTCTCAGAAGCGAACTCAAGTTCGAGCGTTTCAATAACGGAGAAGGTTCTGAAAGTGCTGGAAACAGCGTCGACGGTGAGGGAAGGAAGGATGGAGATCGGAGAGGACTCAACGTGCTTAGCAGCGATCGTACAAAAAGTACTGAAGGTGTCGAACACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTGTGCTATCTGTTCAGAGATGAGAAGGCAGCAGAGGCGTTAACGAAGGCGAACGGATTGACGAAGATTTTACTGTTAATGCAGAGCAATTGCTCGCCACCAGTACGACAGATGGCGAGAGATTTGCTGAAGATTTTCCGAATCAATTCCAAATCGTGCCTAGCGAGTTACGACACGAAAACTACGCACATCATGCCCTGTTAG 1239 47.22 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQILQTKEFVPNHNLHRLIQIWSDSLRHRVHSPDSSPVSDSVLSSDQVLDLVKRIEIDQSRTDSLLRLVSFAAKSVENRRLLCGIGGFVPVLVDLLSNVNGGVLVEQTVRLLHLIRNEIEDKERFVKSILKSDRNCVSSLLLILRKGTVELKICSASLLEHLAIDAESKIVIAETDGLMQELLKLTNSENDSNLIESVLSCLISISMPKRIKIKLVHLGAIKSVTKLLSEANSSSSVSITEKVLKVLETASTVREGRMEIGEDSTCLAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSPPVRQMARDLLKIFRINSKSCLASYDTKTTHIMPC 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4573975 4575213 - Cp4.1LG19g11940.1 Cpe19g00539 485947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00539 412 PANTHER WDSAM1 PROTEIN 4 412 IPR045185 GO:0061630
Cpe19g00539 412 SUPERFAMILY ARM repeat 115 394 IPR016024 -
Cpe19g00539 412 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Cpe19g00539 412 CDD RING-Ubox_PUB 14 56 IPR045210 -
Cpe19g00539 412 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 412 - -
Cpe19g00539 412 SUPERFAMILY RING/U-box 6 78 - -
Cpe19g00539 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 82 IPR013083 -
Cpe19g00539 412 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Cpe19g00539 412 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Cpe19g00539 412 Gene3D - 104 404 IPR011989 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01067 Cpe19g00539 CCT
Cpe10g00346 Cpe19g00539 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00230 Cpe-Chr2:1183807 Cpe19g00539 Cpe-Chr19:4573975 1.12E-38 dispersed
Cpe05g01052 Cpe-Chr5:6968574 Cpe19g00539 Cpe-Chr19:4573975 5.86E-39 dispersed
Cpe19g00539 Cpe-Chr19:4573975 Cpe16g00824 Cpe-Chr16:7940610 2.79E-40 dispersed
Cpe05g01067 Cpe-Chr5:7063600 Cpe19g00539 Cpe-Chr19:4573975 6.27E-136 transposed
Cpe10g00346 Cpe-Chr10:2037028 Cpe19g00539 Cpe-Chr19:4573975 0 wgd
Cpe16g00088 Cpe-Chr16:1650866 Cpe19g00539 Cpe-Chr19:4573975 6.64E-37 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00539 - - cmax:111478747 696.041