Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe19g00539 | ATGGTGAGAGATGACTTGTGTATTACAATTCCGAGCGATTTCAGATGTCCGATCTCGCTTGACGTCATGAAATCCCCTGTAAGTTTGTGTACCGGAGTTACTTACGATCGTTCCAGTATCCAGAAATGGCTCGACAATGGAAACAATACTTGTCCGGCTACCATGCAGATCCTTCAAACTAAGGAGTTCGTCCCTAACCACAATCTCCACCGCCTTATTCAGATTTGGTCCGATTCTCTTCGGCACCGAGTCCACTCGCCCGATTCCTCCCCTGTTTCCGACTCGGTTCTTTCCTCCGATCAAGTTCTTGACCTCGTCAAGCGCATAGAGATCGATCAGTCTCGCACCGACTCGCTTCTGCGGCTTGTCTCTTTCGCCGCTAAATCGGTGGAGAATCGGAGGCTTCTCTGTGGAATCGGCGGTTTCGTGCCGGTTCTTGTCGATCTTCTTAGCAATGTCAATGGCGGCGTTTTGGTTGAGCAGACTGTGAGGTTATTGCATTTGATTCGAAATGAAATAGAAGATAAGGAGCGGTTTGTGAAATCGATATTGAAGAGCGATCGTAATTGTGTTTCGTCTCTGCTTCTGATTCTGCGGAAAGGAACCGTCGAATTGAAAATCTGTTCAGCTAGTCTACTAGAGCATCTCGCAATCGACGCCGAATCGAAGATTGTAATCGCCGAAACGGATGGATTGATGCAAGAATTACTGAAATTAACAAACTCTGAGAACGATTCAAACCTAATCGAATCGGTTCTATCGTGTTTAATTTCAATTTCAATGCCGAAACGGATCAAAATCAAATTAGTCCATCTCGGAGCGATAAAATCGGTAACGAAGCTTCTCTCAGAAGCGAACTCAAGTTCGAGCGTTTCAATAACGGAGAAGGTTCTGAAAGTGCTGGAAACAGCGTCGACGGTGAGGGAAGGAAGGATGGAGATCGGAGAGGACTCAACGTGCTTAGCAGCGATCGTACAAAAAGTACTGAAGGTGTCGAACACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTGTGCTATCTGTTCAGAGATGAGAAGGCAGCAGAGGCGTTAACGAAGGCGAACGGATTGACGAAGATTTTACTGTTAATGCAGAGCAATTGCTCGCCACCAGTACGACAGATGGCGAGAGATTTGCTGAAGATTTTCCGAATCAATTCCAAATCGTGCCTAGCGAGTTACGACACGAAAACTACGCACATCATGCCCTGTTAG | 1239 | 47.22 | MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQILQTKEFVPNHNLHRLIQIWSDSLRHRVHSPDSSPVSDSVLSSDQVLDLVKRIEIDQSRTDSLLRLVSFAAKSVENRRLLCGIGGFVPVLVDLLSNVNGGVLVEQTVRLLHLIRNEIEDKERFVKSILKSDRNCVSSLLLILRKGTVELKICSASLLEHLAIDAESKIVIAETDGLMQELLKLTNSENDSNLIESVLSCLISISMPKRIKIKLVHLGAIKSVTKLLSEANSSSSVSITEKVLKVLETASTVREGRMEIGEDSTCLAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSPPVRQMARDLLKIFRINSKSCLASYDTKTTHIMPC | 412 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 4573975 | 4575213 | - | Cp4.1LG19g11940.1 | Cpe19g00539 | 485947 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe19g00539 | 412 | PANTHER | WDSAM1 PROTEIN | 4 | 412 | IPR045185 | GO:0061630 | |
Cpe19g00539 | 412 | SUPERFAMILY | ARM repeat | 115 | 394 | IPR016024 | - | |
Cpe19g00539 | 412 | ProSiteProfiles | U-box domain profile. | 9 | 83 | IPR003613 | GO:0004842|GO:0016567 | |
Cpe19g00539 | 412 | CDD | RING-Ubox_PUB | 14 | 56 | IPR045210 | - | |
Cpe19g00539 | 412 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED | 4 | 412 | - | - | |
Cpe19g00539 | 412 | SUPERFAMILY | RING/U-box | 6 | 78 | - | - | |
Cpe19g00539 | 412 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 82 | IPR013083 | - | |
Cpe19g00539 | 412 | SMART | Ubox_2 | 13 | 76 | IPR003613 | GO:0004842|GO:0016567 | |
Cpe19g00539 | 412 | Pfam | U-box domain | 10 | 78 | IPR003613 | GO:0004842|GO:0016567 | |
Cpe19g00539 | 412 | Gene3D | - | 104 | 404 | IPR011989 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe05g01067 | Cpe19g00539 | CCT | |
Cpe10g00346 | Cpe19g00539 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00230 | Cpe-Chr2:1183807 | Cpe19g00539 | Cpe-Chr19:4573975 | 1.12E-38 | dispersed | |
Cpe05g01052 | Cpe-Chr5:6968574 | Cpe19g00539 | Cpe-Chr19:4573975 | 5.86E-39 | dispersed | |
Cpe19g00539 | Cpe-Chr19:4573975 | Cpe16g00824 | Cpe-Chr16:7940610 | 2.79E-40 | dispersed | |
Cpe05g01067 | Cpe-Chr5:7063600 | Cpe19g00539 | Cpe-Chr19:4573975 | 6.27E-136 | transposed | |
Cpe10g00346 | Cpe-Chr10:2037028 | Cpe19g00539 | Cpe-Chr19:4573975 | 0 | wgd | |
Cpe16g00088 | Cpe-Chr16:1650866 | Cpe19g00539 | Cpe-Chr19:4573975 | 6.64E-37 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe19g00539 | - | - | cmax:111478747 | 696.041 |