Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe19g00544 | ATGGGGCTGGGAAAGGCTGTCAGCCAGTTTTTGAAAAAGATGGCTGATGCTGAGGATATTCAGCCACTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCCGGTTTTGCTGGTGATGATGCTCCGAGGGCAGTTTTCCCAAGTATTGTTGGTCGTCCCCGACATACTGGTGTCATGGTTGGTATGGGCCAAAAAGATGCCTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATTGTCAGTAACTGGGATGACATGGAGAAGATTTGGCATCACACGTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCACCCCGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCCATGTACGTTGCCATCCAGGCCGTTCTATCACTCTATGCTAGTGGACGTACAACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACCGTTCCCATCTATGAGGGTTATGCTCTCCCTCATGCCATTCTCCGTTTGGACCTTGCTGGTCGTGATCTCACTGATGCACTAATGAAGATCCTCACTGAAAGAGGTTACATGTTTACCACTACTGCCGAACGGGAAATTGTCCGTGACATGAAGGAGAAGTTGGCATATGTTGCTCTTGACTACGAACAAGAACTCGAGACTGCAAAGAGCAGTTCCTCAATTGAGAAGAACTACGAACTGCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTCCTATTCCAGCCATCTCTCATCGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTCGATATCAGAAAGGACCTTTATGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGTATTGCTGACAGGATGAGCAAGGAAATCACAGCCCTTGCTCCCAGCAGCATGAAGATTAAGGTCGTTGCCCCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGCACCTTCCAGCAGATGTGGATTTCAAAGGGTGAATACGACGAGTCGGGTCCATCCATTGTCCACAGGAAGTGCTTCTAA | 1173 | 47.57 | MGLGKAVSQFLKKMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF | 390 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 4606352 | 4609916 | + | Cp4.1LG19g12210.1 | Cpe19g00544 | 485952 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe19g00544 | 390 | CDD | NBD_sugar-kinase_HSP70_actin | 23 | 196 | - | - | |
Cpe19g00544 | 390 | SUPERFAMILY | Actin-like ATPase domain | 19 | 168 | IPR043129 | - | |
Cpe19g00544 | 390 | PANTHER | ACTIN | 14 | 389 | - | - | |
Cpe19g00544 | 390 | Gene3D | - | 23 | 384 | - | - | |
Cpe19g00544 | 390 | Pfam | Actin | 18 | 390 | IPR004000 | - | |
Cpe19g00544 | 390 | PANTHER | ACTIN | 14 | 389 | IPR004000 | - | |
Cpe19g00544 | 390 | ProSitePatterns | Actins signature 2. | 371 | 379 | IPR004001 | - | |
Cpe19g00544 | 390 | SUPERFAMILY | Actin-like ATPase domain | 161 | 390 | IPR043129 | - | |
Cpe19g00544 | 390 | SMART | actin_3 | 20 | 390 | IPR004000 | - | |
Cpe19g00544 | 390 | Gene3D | Actin; Chain A, domain 4 | 195 | 286 | - | - | |
Cpe19g00544 | 390 | ProSitePatterns | Actins and actin-related proteins signature. | 119 | 131 | IPR020902 | - | |
Cpe19g00544 | 390 | PRINTS | Actin signature | 64 | 75 | IPR004000 | - | |
Cpe19g00544 | 390 | PRINTS | Actin signature | 130 | 143 | IPR004000 | - | |
Cpe19g00544 | 390 | PRINTS | Actin signature | 155 | 174 | IPR004000 | - | |
Cpe19g00544 | 390 | PRINTS | Actin signature | 251 | 267 | IPR004000 | - | |
Cpe19g00544 | 390 | PRINTS | Actin signature | 41 | 50 | IPR004000 | - | |
Cpe19g00544 | 390 | PRINTS | Actin signature | 76 | 98 | IPR004000 | - | |
Cpe19g00544 | 390 | ProSitePatterns | Actins signature 1. | 68 | 78 | IPR004001 | - | |
Cpe19g00544 | 390 | Gene3D | - | 153 | 353 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe16g00072 | Cpe19g00544 | CCT | |
Cpe10g00351 | Cpe19g00544 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g01086 | Cpe-Chr1:6403428 | Cpe19g00544 | Cpe-Chr19:4606352 | 2.01E-07 | dispersed | |
Cpe01g02588 | Cpe-Chr1:21003927 | Cpe19g00544 | Cpe-Chr19:4606352 | 1.17E-97 | dispersed | |
Cpe04g00400 | Cpe-Chr4:4643168 | Cpe19g00544 | Cpe-Chr19:4606352 | 0 | dispersed | |
Cpe05g01071 | Cpe-Chr5:7093739 | Cpe19g00544 | Cpe-Chr19:4606352 | 1.51E-135 | dispersed | |
Cpe19g00544 | Cpe-Chr19:4606352 | Cpe03g00368 | Cpe-Chr3:1975582 | 0 | dispersed | |
Cpe05g01072 | Cpe-Chr5:7096182 | Cpe19g00544 | Cpe-Chr19:4606352 | 2.53E-142 | transposed | |
Cpe10g00351 | Cpe-Chr10:2078847 | Cpe19g00544 | Cpe-Chr19:4606352 | 0 | wgd | |
Cpe16g00072 | Cpe-Chr16:1494604 | Cpe19g00544 | Cpe-Chr19:4606352 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe19g00544 | K10355 | - | csv:101215469 | 758.059 |