Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00544 ATGGGGCTGGGAAAGGCTGTCAGCCAGTTTTTGAAAAAGATGGCTGATGCTGAGGATATTCAGCCACTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCCGGTTTTGCTGGTGATGATGCTCCGAGGGCAGTTTTCCCAAGTATTGTTGGTCGTCCCCGACATACTGGTGTCATGGTTGGTATGGGCCAAAAAGATGCCTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATTGTCAGTAACTGGGATGACATGGAGAAGATTTGGCATCACACGTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCACCCCGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCCATGTACGTTGCCATCCAGGCCGTTCTATCACTCTATGCTAGTGGACGTACAACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACCGTTCCCATCTATGAGGGTTATGCTCTCCCTCATGCCATTCTCCGTTTGGACCTTGCTGGTCGTGATCTCACTGATGCACTAATGAAGATCCTCACTGAAAGAGGTTACATGTTTACCACTACTGCCGAACGGGAAATTGTCCGTGACATGAAGGAGAAGTTGGCATATGTTGCTCTTGACTACGAACAAGAACTCGAGACTGCAAAGAGCAGTTCCTCAATTGAGAAGAACTACGAACTGCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTCCTATTCCAGCCATCTCTCATCGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTCGATATCAGAAAGGACCTTTATGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGTATTGCTGACAGGATGAGCAAGGAAATCACAGCCCTTGCTCCCAGCAGCATGAAGATTAAGGTCGTTGCCCCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGCACCTTCCAGCAGATGTGGATTTCAAAGGGTGAATACGACGAGTCGGGTCCATCCATTGTCCACAGGAAGTGCTTCTAA 1173 47.57 MGLGKAVSQFLKKMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4606352 4609916 + Cp4.1LG19g12210.1 Cpe19g00544 485952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00544 390 CDD NBD_sugar-kinase_HSP70_actin 23 196 - -
Cpe19g00544 390 SUPERFAMILY Actin-like ATPase domain 19 168 IPR043129 -
Cpe19g00544 390 PANTHER ACTIN 14 389 - -
Cpe19g00544 390 Gene3D - 23 384 - -
Cpe19g00544 390 Pfam Actin 18 390 IPR004000 -
Cpe19g00544 390 PANTHER ACTIN 14 389 IPR004000 -
Cpe19g00544 390 ProSitePatterns Actins signature 2. 371 379 IPR004001 -
Cpe19g00544 390 SUPERFAMILY Actin-like ATPase domain 161 390 IPR043129 -
Cpe19g00544 390 SMART actin_3 20 390 IPR004000 -
Cpe19g00544 390 Gene3D Actin; Chain A, domain 4 195 286 - -
Cpe19g00544 390 ProSitePatterns Actins and actin-related proteins signature. 119 131 IPR020902 -
Cpe19g00544 390 PRINTS Actin signature 64 75 IPR004000 -
Cpe19g00544 390 PRINTS Actin signature 130 143 IPR004000 -
Cpe19g00544 390 PRINTS Actin signature 155 174 IPR004000 -
Cpe19g00544 390 PRINTS Actin signature 251 267 IPR004000 -
Cpe19g00544 390 PRINTS Actin signature 41 50 IPR004000 -
Cpe19g00544 390 PRINTS Actin signature 76 98 IPR004000 -
Cpe19g00544 390 ProSitePatterns Actins signature 1. 68 78 IPR004001 -
Cpe19g00544 390 Gene3D - 153 353 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe16g00072 Cpe19g00544 CCT
Cpe10g00351 Cpe19g00544 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01086 Cpe-Chr1:6403428 Cpe19g00544 Cpe-Chr19:4606352 2.01E-07 dispersed
Cpe01g02588 Cpe-Chr1:21003927 Cpe19g00544 Cpe-Chr19:4606352 1.17E-97 dispersed
Cpe04g00400 Cpe-Chr4:4643168 Cpe19g00544 Cpe-Chr19:4606352 0 dispersed
Cpe05g01071 Cpe-Chr5:7093739 Cpe19g00544 Cpe-Chr19:4606352 1.51E-135 dispersed
Cpe19g00544 Cpe-Chr19:4606352 Cpe03g00368 Cpe-Chr3:1975582 0 dispersed
Cpe05g01072 Cpe-Chr5:7096182 Cpe19g00544 Cpe-Chr19:4606352 2.53E-142 transposed
Cpe10g00351 Cpe-Chr10:2078847 Cpe19g00544 Cpe-Chr19:4606352 0 wgd
Cpe16g00072 Cpe-Chr16:1494604 Cpe19g00544 Cpe-Chr19:4606352 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00544 K10355 - csv:101215469 758.059