Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00547 ATGAACACCGCTGGTCGACTCATTGCTGGGTCTCATAATAGAAACGAGTTCGTTCTGATCAATGCAGAGGACTCTGTTCGGACAAAGTCTGTGGAGGAATTGAGTGGACAGACATGTCGGATTTGTGGAGATGAGATAGAGTTAACTGATGAAGGAGATCTCTTTGTTGCTTGTAATGAATGTGCCTTCCCAGTTTGTAGAACTTGCAATGAGTATGAGCGAAGAGAAGGAAATCAAGCTTGTCCACAGTGTAAAACCAGATACAAACGCATTAAGGGTAGTCCTCGGGTTGAAGGCGATGACGATGACGATGAAGATGATACCGATGATTTGGATAACGAGTTCGACTATGGCAATCTCGATTCGTTTCGCCCTCATTCTGCCGATGCATCGTTTGTTTCACGCCTTAACACTAGCCGTGGTTCCCACTGTAATGCATCTCACATCAATGGACAGTCGGAGCACGAACCGTCTCGCCTTGGTTCGGAAATTCCTCTCCTGACATACGGCAAGGAGGATTACGAGATTTCTTCTGATCAACATGCTCTTGTACCCCATTTTATGGGTCGTGGAAACAGAGACCATTCGATGTCGTACCCCGATCCATCGATATCTTCTCAACGTAGACCAATGGTTCCCGAGAAAGATATTGCTGTATATGGTTATGGGAGTGTGGCATGGAAGGACAGAATGGAGGATTGGACGAAGAAGCGATATGATAAACTTCAAGTGGTGAAGCATCAAGGGGTTGAAGACGGTGGAAATGATATCGACGATCCCGATTTGCCCATGATGGATGAAGCTAGGCAACCGCTATCAAGGAAATTGCCCATCTCTTCGAGCATGATAAACCCGTACAGATTAATCATCTTGCTTCGACTTGTTATTCTCGGCCTGTTTTTCCATTACAGAATTCTTCATCCAGTTAAAGATGCTTATGGCCTGTGGTTGACTTCAGTAATATGTGAAATTTGGTTTGCGGCATCGTGGATTCTCGATCAGTTCCCGAAATGGTATCCGATTGAAAGGGAAACGTATCTCGATAGGCTATCCCTGAGGTATGAAAAAGAAGGGAAACCTTCTGAATTAGCCAGCGTGGACGTATTTGTCAGTACCGTTGATCCAACGAAAGAACCTCCACTTATCACTGCTAACACGGTACTTTCCATCCTTGCAGTCGACTATCCTGTCGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCAGCCATGTTAACATTTGAAGCTCTCTCTGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTCTAAGAAATTCAATATTGAGCCCCGTGCCCCCGAGTTTTACTTTTCTCAGAAGATCGATAATTTGAAGAACAAGGTCCATCCGGAATTTTTCAGGGAAAGGCGAGCAATGAAGAGAGAATACGGAGAATTTAAGGTTCGGATAAATGCGCTGGTCTCCATGGCTCAAAAGGTCCCTGAGGATGGCTGGACAATGCAAGATGGTACTCCATGGCCCGGGAATAACGTTCGAGACCACCCTGGCATGATTCAGGTCTTCCTTGGCCAGAATGGAGTTTGTGACGTTGAAGGAAAAGAGCTGCCACGTTTGGTTTACGTTTCTCGTGAAAAGCGACCCGGGTTTGAACATCACAAGAAGGCCGGGGCCATGAATGCACTGGTTCGAGTCTCAGCGGTTCTGTCAAATGCTCCTTATCTACTCAATGTCGACTGCGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCGACGTCCGGGAAGAAAGTTTGCTATGTGCAGTTTCCTCAAAGATTTGATGGGATCGATCGACATGATCGATACTCAAATCGGAATGTTGTGTTCTTTGATATCAACATGAAAGGATTAGACGGAGTACAAGGACTGATATATGTCGGTACGGGGTGTGTTTTCCGAAGGGTTGCCCTCTACGATAATGACGCTCCTGCCAAGAAGAAACGCCCGAGCAAAACATGCAACTGCTTGCCAAAATGGTGCTGTCTGTGTTGTGGGTCTAGAAAGAACAAGAACGAGAAAAAGAAGAAGACAACACAGATCCATGCGCTCGAGAATATCGATGGAATCGAAGAACTAAGCATAGAGAAATTGAACGTGTCCGAAACTAAATTAGCGAAGAAATTCGGGCAATCTCCGGTGTTTGTCGCGTCGACCGTGTCGGAAAGTGGAGGAAGTCGTCATGATGTGAGTGCTGCCTCACTGCTAAGAGAAGGCATTCAAGTTATCAGTTGTGGATATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGGTGGATATATGGTTCTGTTACTGAAGATATCTTGACTGGATTTAAGATGCACTGTCACGGTTGGCGGTCTGTGTACTGTATTCCCGAGAGGCCTGCTTTTAAAGGGTCGGCTCCGATTAACCTCTCCGATCGTCTAAACCAAGTTTTGCGGTGGGCTCTAGGATCTGTTGAGATATTCTTGAGCAGACATTGTCCGATCTGGTATGGCTATGGAGGCGGGTTGAAATGGTTGGAACGATTTTCGTACATAAACTCGGTCGTCTATCCGTGGACCTCGATTCCATTGCTTGTTTACTGTAGCCTGCCTGCTATCTGTCTTCTCACCGGAAAGTTTATTGTTCCTGAGTTTTGGGTTATTGGAGGCGTTTCGTCGCATCTTTTTGCTCTTTTCCAAGGTCTACTCAAGGTTTTAGCTGGTGTCAGCACCAACTTCACAGTTACATCCAAAGCAGCTGATGATGGTGAGTTTTCAGAGCTCTATATCTTCAAATGGACATCATTATTAATACCTCCCACGACCTTGTTGATCATAAACATCATCGGCGTGATCGTCGGGATCTCAGACGCCATCAACAATGGATACGACTCGTGGGGTCCTCTTTTCGGAAGGCTATTTTTCGCTCTTTGGGTGATCATCCACCTCTACCCATTCTTGAAGGGATTATTAGGGAAACAAGATCGGCTACCAACAATCATTGTTGTTTGGTCCATTCTTTTAGCCTCAATCTTAACATTACTTTGGGTAAGGATCAACCCATTTGTATCAAAAGACGGCCCCGTTCTAGAAGTTTGCGGGTTGAACTGTGATTAA 3129 45.25 MNTAGRLIAGSHNRNEFVLINAEDSVRTKSVEELSGQTCRICGDEIELTDEGDLFVACNECAFPVCRTCNEYERREGNQACPQCKTRYKRIKGSPRVEGDDDDDEDDTDDLDNEFDYGNLDSFRPHSADASFVSRLNTSRGSHCNASHINGQSEHEPSRLGSEIPLLTYGKEDYEISSDQHALVPHFMGRGNRDHSMSYPDPSISSQRRPMVPEKDIAVYGYGSVAWKDRMEDWTKKRYDKLQVVKHQGVEDGGNDIDDPDLPMMDEARQPLSRKLPISSSMINPYRLIILLRLVILGLFFHYRILHPVKDAYGLWLTSVICEIWFAASWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPTKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFSKKFNIEPRAPEFYFSQKIDNLKNKVHPEFFRERRAMKREYGEFKVRINALVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDVEGKELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGVQGLIYVGTGCVFRRVALYDNDAPAKKKRPSKTCNCLPKWCCLCCGSRKNKNEKKKKTTQIHALENIDGIEELSIEKLNVSETKLAKKFGQSPVFVASTVSESGGSRHDVSAASLLREGIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPERPAFKGSAPINLSDRLNQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIIGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRLPTIIVVWSILLASILTLLWVRINPFVSKDGPVLEVCGLNCD 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4637473 4642653 + Cp4.1LG19g12200.1 Cpe19g00547 485955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00547 1042 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 519 659 IPR029044 -
Cpe19g00547 1042 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 889 1041 - -
Cpe19g00547 1042 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 888 - -
Cpe19g00547 1042 SUPERFAMILY Nucleotide-diphospho-sugar transferases 375 880 IPR029044 -
Cpe19g00547 1042 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 889 1041 - -
Cpe19g00547 1042 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 888 - -
Cpe19g00547 1042 SUPERFAMILY RING/U-box 26 108 - -
Cpe19g00547 1042 MobiDBLite consensus disorder prediction 93 122 - -
Cpe19g00547 1042 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cpe19g00547 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 113 IPR013083 -
Cpe19g00547 1042 MobiDBLite consensus disorder prediction 99 116 - -
Cpe19g00547 1042 Pfam Cellulose synthase 366 888 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cpe19g00547 1042 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cpe19g00547 1042 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00358 Cpe19g00547 CCT
Cpe10g00358 Cpe19g00547 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00494 Cpe-Chr17:3890362 Cpe19g00547 Cpe-Chr19:4637473 0 dispersed
Cpe19g00547 Cpe-Chr19:4637473 Cpe06g00347 Cpe-Chr6:1929692 0 dispersed
Cpe10g00358 Cpe-Chr10:2114592 Cpe19g00547 Cpe-Chr19:4637473 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00547 K10999 - csv:101211094 1879.37