Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00558 ATGATACCCTTTTCCCCATCTTCTTCAATATCCTTTCTGTTCTTCTTTTTCTTCCTTTTTTCCCTCTCTGTTTTCTCTGTTTCTTCTTCTCATACAGACGCCCAGCAGCTGATTTCATTGAAATCTTCACTTCCCAATCCAAACCTCCTTCAAAACTGGCTTTCCAACGGCGACCCATGTTCGTTTTCCGGCGTTTCCTGCAAGGAAACCAGAGTTTCCGCCATAGATTTGAGCTTCGTGTCGTTGAGCTCTAATTTCAGCCATGTTTTCCCTTTGCTTGCAGCTCTCGACCATTTGGAATCGCTTTCTCTGAAATCCACGAACCTTACTGGCTCCATTTCCCTGCCCACTGGATTCAAATGTAGCCCTCTTCTTTCTTCTCTGGATCTGTCACTCAATGGCTTGTTCGGCTCTGTTTCTGATGCCTCTTATTTGGGGTTTTGTTCCAATATCAAGTCGCTTAATCTGTCATTTAACGCTTTTGATTTTCCCCCAAAAGACTCTGCCGCCGGATTGAAGCTCGATTTGCAAGTTCTTGATCTTTCTTCCAATCGGATTGTTGGGTCGAAATTAGTTCCATGGGTTCTCTCTGCTGGGTGTAGTAATTTGCAGTTCTTAGCATTGAAGGGTAACAAAATCAGCGGCGAAATTAATCTCTCATCCTGTAATAAACTCCAGCATTTGGATATCTCCGGCAACAATTTCTCTGCGGGTATTCCGTCGTTAGGTGATTGCTCTGTTTTGGAGTATCTTGATATCTCCGGCAATAAGTTCACCGGCGACGTCGGAAATACTCTGTCTTCTTGTTTGCAACTGAGATTTCTGAATCTCTCGAGCAACCAGTTTCAAGGATCAATCCCTTCATTTTCATCGCCGAATTTGTGGTTTCTTTCCCTTGCTAACAACGATTTTCAGGGGGAGATTCCGGTGAGTATTGCTGATTCTTGTTCTAGTTTGGTTCATTTGGATCTTTCTGAAAATGGTTTGATTGGGGGTATACCTTCTGGTTTGGGGTCTTGTTCTTTGTTGGAATCTTTGGACATTTCTAAAAATAACCTCTCTGGTGAGCTCCCCATTGATGTTTTTGCCAAAATGAGTAGTTTGAAGAGACTGTCTATGTCGGATAACAAGTTTTTCGGGGTTTTGTCGGATTCTCTGTCTCAGCTCACCACTTTGAATTCCTTGGATCTGAGTTCTAATAACTTCTCTGGCTCGATTCCTGTCGGGCTCTGTGAAGATCCTAAGAACAGCTTGAAAGAATTGTTTCTTCAGAACAATTGGTTAACTGGTCGGATCCCTGCAAGTATCAGCAACTGTTCTCAGCTGGTTTCGCTTGATTTGAGCTTCAACTTTCTGAGCGGGACGATCCCTTCAAGCTTGGGATCACTATCTAAGCTGAAGAACTTGATCATGTGGTTGAATCAGCTGGAAGGGGAGATCCCATCGGATTTCAAGAACTTTCAGGGGCTTGAGAATCTGATCCTGGATTTCAATGAGCTAACCGGGACGATTCCTTCCGGTTTAAGCAATTGCACGAACTTGAACTGGATTTCGTTGTCGAACAACCGGTTGAGCGGAGAGATACCAAGGTGGATTGGGCAGCTGCCAAGCCTAGCCATCCTTAAGCTGAGTAACAACTCATTCCATGGAAGAATACCTCGGGAGCTCGGTGATTGTCGAAGCTTGATATGGCTGGATCTGAATACGAATATGCTGAACGGAACGATTCCTCCGGAGCTGTTTCGACAATCGGGTAACATCGCTGTAAACTTTATCACTGGGAAGTCTTATGCTTACATTAAGAATGATGGTAGCAAGCAGTGCCATGGAGCTGGAAATTTGGTGGAGTTTGCTGGGATAAGACAAGAACAAGTGAACAGGATATCAAGTAAGAGTCCCTGCAATTTCACCAGGGTTTATAAAGGAATGACTCAACCAACGTTTAACCATAACGGGTCGATGATCTTCCTCGATCTTTCGCATAATATGTTGTCTGGTAGTATTCCAAAGGAGATTGGTTCTACAAAATATCTGTACATATTGGATTTGGGGCACAACAGGGTGTCGGGAGGCATTCCGCAGGAGCTGGGCGACTTGACGAAGCTTAACATTCTTGATCTGTCAAGCAATGAGCTTGAAGGATCAATACCATTGTCCTTGACTGGGCTATCCTCCCTCATGGAGATTGATCTGTCAAACAATCATCTCAATGGTTCGATACCCGAATCAGCTCAGTTCGAAACGTTCCCGGCATCTGGTTTTGCAAATAACTCTGGCCTCTGTGGGTATCCTCTGCCTCAATGCAGGGTTGATTCAGCAGCAAATGCAAATTCTCAGCATCAAAGATCTCATAGGAAACAGGCGTCGCTTGCAGGGAGCGTCGCGATGGGGCTACTATTCTCCCTCTTCTGTATATTCGGTCTGATCATAGTCGTTATCGAGATGAAGAAGAGAAGGAAAAACAAGGATGCTGCTCTTGATTCTTATATTGACACTCATTCCCAGTCAGGCAACACAACCACCGTGAACTGGAAGAACACCTGTGTTCGTGAAGCATTGAGCATCAATCTTGCAACATTCGAGAAGCCACTTCGGAAGCTTACGTTTGCAGATCTTCTCGACGCCACCAATGGCTTCCACGACAATACGCTCATTGGTTCGGGAGGTTTCGGTGACGTATATAAGGCTCAATTGAAGGATGGAAGCATTGTAGCCATCAAGAAGCTGATTCATGTCAGTGGACAGGGTGATAGGGAGTTCACTGCAGAAATGGAAACCATTGGCAAAATCAAACACCGAAACCTCGTACCTCTTCTCGGCTACTGCAAAGTCGGAGATGAACGCCTTCTTGTGTACGATTACATGAAATATGGAAGCTTGGAAGACGTTTTACACGACCATAACAAGGCTGGAATCAAACTCAATTGGGCTGCTAGAAGAAAGATTGCCATTGGAGCTGCTAGAGGCCTGGCTTTCCTTCACCACAATTGCATCCCTCACATCATCCACAGGGACATGAAATCCAGCAATGTCTTATTGGATGAGAACTTGGAAGCCAGAGTCTCTGATTTTGGTATGGCTCGACTCATGAGTGCTATGGACACCCATTTGAGTGTCAGCACATTAGCCGGTACCCCCGGTTACGTCCCTCCCGAATATTACCAAAGCTTCCGCTGTTCGACCAAAGGCGATGTGTACAGCTACGGCGTCGTTATGCTCGAGCTTTTGACAGGAAAACGACCCACAGATTCTGCCGATTTTGGAGACAACAACCTCGTCGGATGGGTTAAACAACACGCCAAGTTGGACCTAACCAATGTCTTCGATCCCGAGCTCTTGAAGGAAGATCCCAACCTTAAGATAGAGCTTTTAGAACACTTGAAAGTAGCTGTTGCTTGCTTAGATGATAGGTCCTGGCGGCGTCCAACCATGATCCAAGTGATGACGATGTTCAAGGAAATCCAAGCTGGGTCGGGTATGGATTCGCAATCTACCATCGGATCCGATAACGGTGGATTCAGCATCGACATGGTAGACATGAGCTTAAAGGAAGTACCAGAAGGCAAGTACTAG 3573 45.34 MIPFSPSSSISFLFFFFFLFSLSVFSVSSSHTDAQQLISLKSSLPNPNLLQNWLSNGDPCSFSGVSCKETRVSAIDLSFVSLSSNFSHVFPLLAALDHLESLSLKSTNLTGSISLPTGFKCSPLLSSLDLSLNGLFGSVSDASYLGFCSNIKSLNLSFNAFDFPPKDSAAGLKLDLQVLDLSSNRIVGSKLVPWVLSAGCSNLQFLALKGNKISGEINLSSCNKLQHLDISGNNFSAGIPSLGDCSVLEYLDISGNKFTGDVGNTLSSCLQLRFLNLSSNQFQGSIPSFSSPNLWFLSLANNDFQGEIPVSIADSCSSLVHLDLSENGLIGGIPSGLGSCSLLESLDISKNNLSGELPIDVFAKMSSLKRLSMSDNKFFGVLSDSLSQLTTLNSLDLSSNNFSGSIPVGLCEDPKNSLKELFLQNNWLTGRIPASISNCSQLVSLDLSFNFLSGTIPSSLGSLSKLKNLIMWLNQLEGEIPSDFKNFQGLENLILDFNELTGTIPSGLSNCTNLNWISLSNNRLSGEIPRWIGQLPSLAILKLSNNSFHGRIPRELGDCRSLIWLDLNTNMLNGTIPPELFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLVEFAGIRQEQVNRISSKSPCNFTRVYKGMTQPTFNHNGSMIFLDLSHNMLSGSIPKEIGSTKYLYILDLGHNRVSGGIPQELGDLTKLNILDLSSNELEGSIPLSLTGLSSLMEIDLSNNHLNGSIPESAQFETFPASGFANNSGLCGYPLPQCRVDSAANANSQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVVIEMKKRRKNKDAALDSYIDTHSQSGNTTTVNWKNTCVREALSINLATFEKPLRKLTFADLLDATNGFHDNTLIGSGGFGDVYKAQLKDGSIVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGDERLLVYDYMKYGSLEDVLHDHNKAGIKLNWAARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVMLELLTGKRPTDSADFGDNNLVGWVKQHAKLDLTNVFDPELLKEDPNLKIELLEHLKVAVACLDDRSWRRPTMIQVMTMFKEIQAGSGMDSQSTIGSDNGGFSIDMVDMSLKEVPEGKY 1190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4712113 4715685 + Cp4.1LG19g11850.1 Cpe19g00558 485966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00558 1190 SUPERFAMILY L domain-like 645 764 - -
Cpe19g00558 1190 Pfam Protein kinase domain 879 1148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00558 1190 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1001 1013 IPR008271 GO:0004672|GO:0006468
Cpe19g00558 1190 SMART serkin_6 879 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00558 1190 Gene3D Phosphorylase Kinase; domain 1 839 954 - -
Cpe19g00558 1190 SUPERFAMILY RNI-like 54 287 - -
Cpe19g00558 1190 PANTHER SYSTEMIN RECEPTOR SR160 19 1166 - -
Cpe19g00558 1190 PRINTS Leucine-rich repeat signature 343 356 - -
Cpe19g00558 1190 PRINTS Leucine-rich repeat signature 699 712 - -
Cpe19g00558 1190 Pfam Leucine rich repeat 678 736 IPR001611 GO:0005515
Cpe19g00558 1190 Pfam Leucine rich repeat 343 402 IPR001611 GO:0005515
Cpe19g00558 1190 Pfam Leucine rich repeat 489 547 IPR001611 GO:0005515
Cpe19g00558 1190 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 1166 - -
Cpe19g00558 1190 Pfam Leucine Rich Repeat 417 439 IPR001611 GO:0005515
Cpe19g00558 1190 Pfam Leucine Rich Repeat 442 463 IPR001611 GO:0005515
Cpe19g00558 1190 ProSitePatterns Protein kinases ATP-binding region signature. 885 908 IPR017441 GO:0005524
Cpe19g00558 1190 Gene3D - 590 650 - -
Cpe19g00558 1190 CDD STKc_IRAK 885 1154 - -
Cpe19g00558 1190 Pfam Leucine Rich repeat 221 236 IPR001611 GO:0005515
Cpe19g00558 1190 Pfam Leucine rich repeat N-terminal domain 32 67 IPR013210 -
Cpe19g00558 1190 Gene3D Transferase(Phosphotransferase) domain 1 955 1156 - -
Cpe19g00558 1190 Gene3D Ribonuclease Inhibitor 37 768 IPR032675 -
Cpe19g00558 1190 SUPERFAMILY RNI-like 264 579 - -
Cpe19g00558 1190 SMART LRR_typ_2 560 583 IPR003591 -
Cpe19g00558 1190 SMART LRR_typ_2 365 388 IPR003591 -
Cpe19g00558 1190 SMART LRR_typ_2 723 746 IPR003591 -
Cpe19g00558 1190 SMART LRR_typ_2 487 511 IPR003591 -
Cpe19g00558 1190 SMART LRR_typ_2 535 559 IPR003591 -
Cpe19g00558 1190 SMART LRR_typ_2 389 413 IPR003591 -
Cpe19g00558 1190 SMART LRR_typ_2 316 340 IPR003591 -
Cpe19g00558 1190 SMART LRR_typ_2 699 722 IPR003591 -
Cpe19g00558 1190 ProSiteProfiles Protein kinase domain profile. 879 1154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00558 1190 SUPERFAMILY Protein kinase-like (PK-like) 865 1155 IPR011009 -
Cpe19g00558 1190 Pfam Brassinosteroid receptor island domain 585 649 IPR045381 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01866 Cpe-Chr1:15984614 Cpe19g00558 Cpe-Chr19:4712113 0 dispersed
Cpe01g02372 Cpe-Chr1:19835416 Cpe19g00558 Cpe-Chr19:4712113 2.51E-10 dispersed
Cpe04g01251 Cpe-Chr4:10438669 Cpe19g00558 Cpe-Chr19:4712113 5.29E-18 dispersed
Cpe13g00437 Cpe-Chr13:4702710 Cpe19g00558 Cpe-Chr19:4712113 6.33E-25 dispersed
Cpe13g00930 Cpe-Chr13:7877322 Cpe19g00558 Cpe-Chr19:4712113 9.15E-07 dispersed
Cpe14g00338 Cpe-Chr14:2063042 Cpe19g00558 Cpe-Chr19:4712113 3.25E-21 dispersed
Cpe18g00565 Cpe-Chr18:6166516 Cpe19g00558 Cpe-Chr19:4712113 1.78E-13 dispersed
Cpe19g00558 Cpe-Chr19:4712113 Cpe09g01014 Cpe-Chr9:8946550 4.02E-135 dispersed
Cpe20g00314 Cpe-Chr20:1780998 Cpe19g00558 Cpe-Chr19:4712113 5.67E-13 dispersed
Cpe10g00372 Cpe-Chr10:2199330 Cpe19g00558 Cpe-Chr19:4712113 4.33E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63035 PF00069 Pkinase 5.80E-45 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00558 K13415 - csv:101209118 2048.86