Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00574 ATGGCGAGCGAATTTGGAGAATCAACAAGCGTGCCAAATCAAAACCCCTCTTCGTCCAGTAACAATGATATTGGCGATTTCGAATGCAATATTTGTTTCGAGTTAGCTCAAGATCCAATTATCACTCTCTGTGGCCATCTCTTTTGCTGGCCTTGTCTGTATAGATGGTTGCACTATCACTCACAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTATTGAGCAGGAGAAATTGATTCCTCTTTATGGTAGGGGAAAGGTACCATCTGACCCGAGATTGAAGAGGTATTCTGGTATGGATGTTCCGAGTCGCCCTGCTGGTCAAAGGCCTCAAACAGCACCTCCCCCTGTTGCTAATGACTTTGCAAACTATGGGTTTGGATTCACTGGTGGCTTTATGCCAATGTCAACAGCAAGGATTGGCAACTTCACCTTGGCGACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAATATCCAGTTTCATGGATTTCCTGATGCTACAGTTTATGGGACTACTTCTGGTTACCCCCCCTATGCATTCAACACATTCCATGGGGGTCATGGCCACCATTTTCAGCAACCGACGAGTCAAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTGATTCTTGCCTTGCTTTGGTGGTAG 675 45.04 MASEFGESTSVPNQNPSSSSNNDIGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHYHSQCQECPVCKALIEQEKLIPLYGRGKVPSDPRLKRYSGMDVPSRPAGQRPQTAPPPVANDFANYGFGFTGGFMPMSTARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPPYAFNTFHGGHGHHFQQPTSQGQHADNVLKNLLLLVGVFVILALLWW 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4819902 4820576 + Cp4.1LG19g11770.1 Cpe19g00574 485982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00574 224 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 223 - -
Cpe19g00574 224 SUPERFAMILY RING/U-box 25 82 - -
Cpe19g00574 224 Pfam Zinc finger, C3HC4 type (RING finger) 27 74 - -
Cpe19g00574 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 223 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cpe19g00574 224 MobiDBLite consensus disorder prediction 1 20 - -
Cpe19g00574 224 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Cpe19g00574 224 ProSiteProfiles Zinc finger RING-type profile. 29 70 IPR001841 -
Cpe19g00574 224 SMART ring_2 29 69 IPR001841 -
Cpe19g00574 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 99 IPR013083 -
Cpe19g00574 224 CDD RING-HC_AtRMA_like 27 71 - -
Cpe19g00574 224 MobiDBLite consensus disorder prediction 93 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00449 Cpe-Chr4:5240411 Cpe19g00574 Cpe-Chr19:4819902 4.51E-06 dispersed
Cpe19g00574 Cpe-Chr19:4819902 Cpe02g00705 Cpe-Chr2:4450697 2.33E-28 dispersed
Cpe10g00390 Cpe-Chr10:2290159 Cpe19g00574 Cpe-Chr19:4819902 9.11E-135 wgd
Cpe11g00182 Cpe-Chr11:984557 Cpe19g00574 Cpe-Chr19:4819902 1.44E-81 wgd
Cpe19g00574 Cpe-Chr19:4819902 Cpe07g00444 Cpe-Chr7:2853315 3.47E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00574 K10666 - csv:101205026 397.512