Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00580 ATGTCCCACGATTATCATCCTCATCAAGGAATCTTAGCCTTCTCTAATCCCTTAGACAAATCCAATTCCCCCTCTCTCCCTCACCAGATCCGTCGTGATAAGCTTCGAGTCGACTCCTTCTCCTCCGATCCACTACCTCCGCCACCGCCTACGGTGGCGGGAATCGACGAACATCTCCACCATCACCATCACCATCACCAACAGCATCTTCACCATGTCTATGCTACCTCACCTACTGAGGGGACCATGTTATCAGACATGTTCAATTACCCTCCAACTCCCTCCGCTGCTCCCGCCTCCGTTGAATTCTCCGACAATTTTCGAACTTTACGCCAACCCAACTCGGCTTCCGCCATGCAGCTTTTCTTGATGAACCCTCCTCCGCCACCACCACCGCGATCGCCCTCGCCACCTTCTACCTCCTCCACTCTCCACATGCTCCTCCCGAATCTACCGTCGGGTTCTCTTCAGGGTTTCGAAAGTGGCGGCGTTGGAGATCAGACGGGGTTTGGCCAATTCGCCGTTGCTGAAAATCAAGGGCTTTCGCTCTCGCTTCACTCGTCGTCGTTACAACACTTGGAGGACGTCGGAGCCGGTGCAAAAGCGGATGAATTGCGAATTAGAGATGGTGGGATGTTGTATAATTACAACAACAACAATAATCAAGTCCATGGCGGAGGAGGAAATGGATCAAACTCCTCAATTTTGCAATATTCTTTTAGGAATAATTCAGAGAATTCTCCTCATAGCTTTCAAATGAATCCAAACCATCAAGTTCAAATTGGATTTGGGTCTTCTTTGGGAGTTGTAAATCTTTTGAGGAATTCAAAATATGTCAAAGCCGCTCAAGAATTGCTCGAGGAATTTTGCAGCGTTGGTCGGGTTCAGCTCAAGAAAAACAAGTCCAATATGAAGCAAAGCCACAACAATCCCGAAACCGCCGCAGGCGGCAGTGGCGGTGGCGCGTACAACTTATACCGCGAGCAAATGCAAATGGTGGTGAACTCATTTGACTTGGTGATGGGGTTCGGAGCAGCAGCGCCATACACAACGCTAACGCAGAAGGCGATGTCTAGACACTTCCGGTGCTTAAAAGACGCCATAACCGAGCAGTTAAAGCAGAGCTACGAGGCATTGGGGGAGAAAGGTGGGAATGGAGGCTCGGGAATAACTAAAGGAGAGACACCAAGATTGAAGCTGCTGGAACAAAGCCTCCGCCAGCAAAGGGCTTTCCATCAAATGGGTATGATGGAACAAGAAGCTTGGAGGCCACAGCGTGGCCTCCCTGAACGATCTGTCAACATCCTTAGAGCTTGGCTGTTCGAGCATTTTCTTCACCCGTACCCAAGCGACGCAGACAAGCTCCTGTTAGCTCGGCAGACTGGTTTGTCCAGAAATCAGGTTTCAAATTGGTTCATTAATGCAAGAGTTCGTTTGTGGAAACCCATGGTAGAAGAAATGTACCAAATTGAAGGCAAGGACGAAACAGATCACTCTCATCAACAACAGCCATCAAAAGACGACGACGACGACACCACAGACAATAAGATCCAAAACAGTGCCATAAATGCACAAAATCCAACTCCCACCACCGCCACCACTTCCTCCATTCCACCGCCGTCTACCACCATTGCAGAGGAAGGTGCGGCGGGGTTCACGGCGACCCATGATCAATTCTCGGAGCTGCATGATGTGTGGCGACATGGAAGCGGACAACATTATGGGACCATGTCTGAGGATGCCAGAGCAGCGACTGACGTAAGTAATGGTCCAACACTTATAAGGTTTGGAACTAGTGGTACGACAACCGGTGACGTGTCACTCACTTTAGGTCTCCGCCACGCCGGTAACACTTCCGCCGCCACTATGGATAACCCTTCTTTCTCGCTCCGAGACTTTGGTCACTCTTAG 1911 50.08 MSHDYHPHQGILAFSNPLDKSNSPSLPHQIRRDKLRVDSFSSDPLPPPPPTVAGIDEHLHHHHHHHQQHLHHVYATSPTEGTMLSDMFNYPPTPSAAPASVEFSDNFRTLRQPNSASAMQLFLMNPPPPPPPRSPSPPSTSSTLHMLLPNLPSGSLQGFESGGVGDQTGFGQFAVAENQGLSLSLHSSSLQHLEDVGAGAKADELRIRDGGMLYNYNNNNNQVHGGGGNGSNSSILQYSFRNNSENSPHSFQMNPNHQVQIGFGSSLGVVNLLRNSKYVKAAQELLEEFCSVGRVQLKKNKSNMKQSHNNPETAAGGSGGGAYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAITEQLKQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQIEGKDETDHSHQQQPSKDDDDDTTDNKIQNSAINAQNPTPTTATTSSIPPPSTTIAEEGAAGFTATHDQFSELHDVWRHGSGQHYGTMSEDARAATDVSNGPTLIRFGTSGTTTGDVSLTLGLRHAGNTSAATMDNPSFSLRDFGHS 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4851063 4854936 + Cp4.1LG19g11750.1 Cpe19g00580 485988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00580 636 MobiDBLite consensus disorder prediction 120 163 - -
Cpe19g00580 636 ProSiteProfiles 'Homeobox' domain profile. 419 482 IPR001356 GO:0003677
Cpe19g00580 636 MobiDBLite consensus disorder prediction 139 162 - -
Cpe19g00580 636 MobiDBLite consensus disorder prediction 1 70 - -
Cpe19g00580 636 Pfam Homeobox KN domain 439 478 IPR008422 GO:0003677|GO:0006355
Cpe19g00580 636 MobiDBLite consensus disorder prediction 492 515 - -
Cpe19g00580 636 CDD homeodomain 422 483 IPR001356 GO:0003677
Cpe19g00580 636 Gene3D - 425 487 - -
Cpe19g00580 636 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 65 319 - -
Cpe19g00580 636 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 323 620 - -
Cpe19g00580 636 MobiDBLite consensus disorder prediction 516 542 - -
Cpe19g00580 636 MobiDBLite consensus disorder prediction 492 545 - -
Cpe19g00580 636 SMART HOX_1 422 486 IPR001356 GO:0003677
Cpe19g00580 636 SUPERFAMILY Homeodomain-like 423 490 IPR009057 -
Cpe19g00580 636 SMART prehox3 267 370 IPR006563 -
Cpe19g00580 636 MobiDBLite consensus disorder prediction 123 138 - -
Cpe19g00580 636 Pfam Associated with HOX 273 311 IPR006563 -
Cpe19g00580 636 Pfam Associated with HOX 323 369 IPR006563 -
Cpe19g00580 636 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 65 319 - -
Cpe19g00580 636 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 323 620 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00580 Cpe-Chr19:4851063 Cpe05g00449 Cpe-Chr5:2586530 3.82E-70 dispersed
Cpe10g00394 Cpe-Chr10:2311453 Cpe19g00580 Cpe-Chr19:4851063 0 wgd
Cpe16g00014 Cpe-Chr16:178969 Cpe19g00580 Cpe-Chr19:4851063 9.95E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50993 PF07526 POX 2.60E-20 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00580 - - bhj:120073177 811.986