Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00606 ATGCGTTGGTTGCCTAATATCTCCTTTACCCCTTCTTCCATAGTCAGGATTCCGGGCACCGCCACCGGTGGTGATTCTCCAACCAGAAGGACTGCCTCCACTCGCTCCGACGACAATAATTATTGGAGAATTGCTTGGCGTTTTGGCGCCTCTAAGTATTCGCGCCAAAGGAAGCTTCGAAACCTAAGCGGAAATGATCGCGCCGCTGCTTCTTTGCCTAAATGGTCCGATACTACGCCCGAGCCGGTCTCCTTCTCTAAATCGCCTAGTACCTCTGAGGATCGTGCCGTGCCGTTGCCGCTCCCGGAGCTTTCCCCTACGTTTCAGCGTCGAGAAGGGATTTCGAATTCGAATTCTGGATGTGGAGATGCGGATTGCCCTCTTCCGTCGCCCAAGGTGTTGCGTGGTCGAGGCGGGGACGACCGCGATGTAGATAGAGATAGAACTGCCCCTGCTCACAAGATTGGGGGTGGGGCCTCCAATAGCGCTCCGATTAGAAGTATATTTGATTCCCGGGAGAGGCAGAGGAAAGAAGAGCAGGCTGAGACAAGGTCGTCTAGCAGGGCGAGTCGAGATGCATTAGGACATCCGCAAAGATCGCGGAACAGTTTCAGGATTGATGTTCCTAGTAGAAGTGCTCCTACTAGTCCGTATGCAAGTCCTGCACTCAGTCCCCAAAGAAATAGTTCCATTAACCTTTCAAATATCCATCATGAGGCGGCTCCAGTCGGAAATCAAGGCTGGTCTGCACCTGAGCTGCCAAATTTCCATTATGGGACTCCAGTAGGAAATCACGTCTGGTCTGCTCCCGAGCTGCCAGCCTCAGCAATGATGCGGGGGGTTCCTCCTGCATTCTTTGATGGCTCCACTTTTAGCTCTGAGAGTTCTCCCATGCATAGCCCAACAACACATAGCCCAAGAATGCATAGCCCAAGAATGCATAGTCCAAGAGGTAGAAGTCCCCACCGAGATCCCAGAAGTCCTACAGGACCTGCATCTCCATTGCACACCAAGATTTCCCTTGAAACACGTTCTGTACGTCGAGAAAGTGCTGGTCCTGTGAGTGTCCACCCTTTACCTCTTCCTCCTGGAGTACCAATGCCTTCACCATCAACCCCAATGCCTTTACAATCAACCCCAATTACACAAGCCAACACTAAAACTGAGGCAATCTCAATGAAAAATCAATGGCAGAAAGGAAAGCTTATTGGCCGGGGCACATTTGGTAGTGTTTACGTTGCAAGCAACAGAGAAAATGGATCTTTATGTGCAATGAAGGAAGTTGAATTATTTCCTGATGATCCGAAATCGGCTGAATGTATAAAGCAATTAGAACAGGAGATCAAACTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTATGGCAGCGATGTTGTTGAAGATCGATTGTATATATACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGGAATTTTACTCGTCACATCCTCTCAGGGTTGGCCTACTTACACAGCACAAAGACTATACATCGGGACATTAAAGGTGCTAATTTGCTTGTAGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTTTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTTCTTCTGTCTGTGATGCAGAAAGATAACAACTCTGATCTTGCCCTGGCTGTTGATATTTGGAGCCTTGGGTGCACTATTATAGAAATGTTCACTGGCAAGCCACCTTGGAGCGAGTATGAAGGGGCTGCAGCAATGTTTAAGGTCATGAGAGATGCCCCACCAATACCTGAATCATTATCATACGAAGCCAGAGAGTTCTTAAAATGCTGCTTTCAGAGAAATCCGGCAGAGAGGCCGACTGCTGCCATGCTGCTTGAACATCCGTTTATGAAAAACTTGCAGAATCCAGAAGCTCCATCTTTCTCGCTGCCCGTAGCTGGATCAAATTTGACGGATAAATGCTATAGCCCAAGTGAACAGTTTTCAAGTAAATTTGATCAGCTTTCCATGCTTCCAAGCTCACAAAATCCCAAGGGAAAATTAGCTTCTGAGAGGCAAGAGTTGCTTTTTCCCAGCTCTCCGCAATGTCTCGTTATTCCCCCCGTTCTACCCTTGAGGCTCTTCCACTACTGTCTCCTCCACGCTCAGTCCAAAGTATGCATTCCCCTGCAAATGCGCTCGGCTATGTCAATCAAACCAATAAAAGATGAGCCATGCAGTATTATAGCGAAGGAAAGTATCTGTGCCAGGCATGCCTCTGGCTTTGCTTGTACCTTCAATCGACCAGCAGTTGGCAGGGGTGGCTGA 2391 48.06 MRWLPNISFTPSSIVRIPGTATGGDSPTRRTASTRSDDNNYWRIAWRFGASKYSRQRKLRNLSGNDRAAASLPKWSDTTPEPVSFSKSPSTSEDRAVPLPLPELSPTFQRREGISNSNSGCGDADCPLPSPKVLRGRGGDDRDVDRDRTAPAHKIGGGASNSAPIRSIFDSRERQRKEEQAETRSSSRASRDALGHPQRSRNSFRIDVPSRSAPTSPYASPALSPQRNSSINLSNIHHEAAPVGNQGWSAPELPNFHYGTPVGNHVWSAPELPASAMMRGVPPAFFDGSTFSSESSPMHSPTTHSPRMHSPRMHSPRGRSPHRDPRSPTGPASPLHTKISLETRSVRRESAGPVSVHPLPLPPGVPMPSPSTPMPLQSTPITQANTKTEAISMKNQWQKGKLIGRGTFGSVYVASNRENGSLCAMKEVELFPDDPKSAECIKQLEQEIKLLSQLKHPNIVQYYGSDVVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNNSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDAPPIPESLSYEAREFLKCCFQRNPAERPTAAMLLEHPFMKNLQNPEAPSFSLPVAGSNLTDKCYSPSEQFSSKFDQLSMLPSSQNPKGKLASERQELLFPSSPQCLVIPPVLPLRLFHYCLLHAQSKVCIPLQMRSAMSIKPIKDEPCSIIAKESICARHASGFACTFNRPAVGRGG 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4987930 4993322 + Cp4.1LG19g11420.1 Cpe19g00606 486014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00606 796 MobiDBLite consensus disorder prediction 109 123 - -
Cpe19g00606 796 MobiDBLite consensus disorder prediction 15 35 - -
Cpe19g00606 796 MobiDBLite consensus disorder prediction 169 186 - -
Cpe19g00606 796 MobiDBLite consensus disorder prediction 64 229 - -
Cpe19g00606 796 ProSitePatterns Protein kinases ATP-binding region signature. 403 426 IPR017441 GO:0005524
Cpe19g00606 796 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 1 710 - -
Cpe19g00606 796 MobiDBLite consensus disorder prediction 135 152 - -
Cpe19g00606 796 MobiDBLite consensus disorder prediction 187 229 - -
Cpe19g00606 796 SUPERFAMILY Protein kinase-like (PK-like) 369 696 IPR011009 -
Cpe19g00606 796 MobiDBLite consensus disorder prediction 288 369 - -
Cpe19g00606 796 Pfam Protein kinase domain 398 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00606 796 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 710 - -
Cpe19g00606 796 ProSiteProfiles Protein kinase domain profile. 397 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00606 796 MobiDBLite consensus disorder prediction 77 93 - -
Cpe19g00606 796 Gene3D Transferase(Phosphotransferase) domain 1 393 682 - -
Cpe19g00606 796 SMART serkin_6 397 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00606 796 MobiDBLite consensus disorder prediction 288 309 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00525 Cpe-Chr19:4459172 Cpe19g00606 Cpe-Chr19:4987930 4.47E-113 dispersed
Cpe10g00425 Cpe-Chr10:2474215 Cpe19g00606 Cpe-Chr19:4987930 0 wgd
Cpe11g00172 Cpe-Chr11:933038 Cpe19g00606 Cpe-Chr19:4987930 5.61E-170 wgd
Cpe19g00606 Cpe-Chr19:4987930 Cpe07g00458 Cpe-Chr7:2927007 2.12E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63039 PF00069 Pkinase 4.30E-68 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00606 - - cmo:103484760 1053.89