Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00624 ATGGACTGGATTCGAGGACATGAGATTGGGTGTGGGAGTTTTGCGACCATCAATTTAGCCATGCCTTCTAACACTTCTACTGCTCAGTTTCCTCCATTAATGGCCGTTAAATCATCTCCAGCTGTCTCCTCTGCCTCGCTAAAGAACGAGAAGCGGGTTTTGGATCTTTTGGGTGATTGCCCTCAAATTATACGGTGTTTTGGTGAGAGCTGCAGCGTTGAGAGAGGCGACGAGTTATATAATTTGTTTCTTGAGTATGCTAGTGGGGGTAGTTTGGCCGACAGAATACAGAGCCACGGTGGTTGGTTGCCGGAATTTGAGGTTCGGCGGTTGACTAGGACGATTCTCGAAGGGCTTCGGTATATTCACGAGAAAGGATTTGTTCACTGCGATGTGAAGCCTCGGAATATTCTAGTGTTTGGTGACGGCGATGCTAAAATTGCTGATTTTGGATTGTCGAAGAAGGCGGGGAAAAACAGAGCAGAAACAGGGGAAGAGGGGAAATTTCAATTGAGAGGCTCTCCCCTGTACATGTCGCCGGAATCGGTGAACGATAACGAGTACGAGTCGCCGTGTGACATTTGGGCTGTCGGATGCGCGGTGGTGGAGATGTTGACCGGAAAACCCGCTTGGAATTTCCCAATGGAATCCAACATCTATTCTCTGTTACTTAAAATTGGGATCGGAGAGGAATTGCCGAAAATCCCCAAATATATTTCCGAGGAAGGGAAAGATTTTCTGGGTAAATGCCTGGTGAAGGATCCCGCAAAGAGATGGACGGCTGAGATGCTTCTGAACCATCCATTTCTAGCAGACTCCGGCAGCAGCTCTGTTCCATTGACGCCCAAGGATGAACCATCAACGTCGCCGAGATGCCCTTTCGATTTCGAAGATTGGGCATCAATTCACTCGCAAGAGGTGGATCAGAAATTCGAGGAAGAATCAAATTGTTGGTTGGATTCGTCGTGTCCGTGGTCGTGTTCACCGACGGAGCGGCTGCTTCAGCTAGTGGACAACGGGCCAGTTGACTGGGTCATCACTGACAGTTGGGTCACCGTCAGATGA 1065 49.01 MDWIRGHEIGCGSFATINLAMPSNTSTAQFPPLMAVKSSPAVSSASLKNEKRVLDLLGDCPQIIRCFGESCSVERGDELYNLFLEYASGGSLADRIQSHGGWLPEFEVRRLTRTILEGLRYIHEKGFVHCDVKPRNILVFGDGDAKIADFGLSKKAGKNRAETGEEGKFQLRGSPLYMSPESVNDNEYESPCDIWAVGCAVVEMLTGKPAWNFPMESNIYSLLLKIGIGEELPKIPKYISEEGKDFLGKCLVKDPAKRWTAEMLLNHPFLADSGSSSVPLTPKDEPSTSPRCPFDFEDWASIHSQEVDQKFEEESNCWLDSSCPWSCSPTERLLQLVDNGPVDWVITDSWVTVR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5093380 5094444 + Cp4.1LG19g11220.1 Cpe19g00624 486032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00624 354 Pfam Protein kinase domain 6 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00624 354 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 313 - -
Cpe19g00624 354 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00624 354 SUPERFAMILY Protein kinase-like (PK-like) 3 294 IPR011009 -
Cpe19g00624 354 SMART serkin_6 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00624 354 Gene3D Transferase(Phosphotransferase) domain 1 2 320 - -
Cpe19g00624 354 ProSitePatterns Protein kinases ATP-binding region signature. 9 37 IPR017441 GO:0005524
Cpe19g00624 354 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 313 - -
Cpe19g00624 354 CDD STKc_MAPKKK 2 270 - -
Cpe19g00624 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00788 Cpe-Chr12:7117202 Cpe19g00624 Cpe-Chr19:5093380 6.77E-60 dispersed
Cpe15g00739 Cpe-Chr15:7711421 Cpe19g00624 Cpe-Chr19:5093380 3.66E-69 dispersed
Cpe16g00131 Cpe-Chr16:2986556 Cpe19g00624 Cpe-Chr19:5093380 3.94E-138 dispersed
Cpe16g00429 Cpe-Chr16:5648554 Cpe19g00624 Cpe-Chr19:5093380 2.88E-66 dispersed
Cpe18g00503 Cpe-Chr18:5797740 Cpe19g00624 Cpe-Chr19:5093380 8.84E-54 dispersed
Cpe19g00624 Cpe-Chr19:5093380 Cpe10g00777 Cpe-Chr10:4420219 3.34E-63 dispersed
Cpe19g00624 Cpe-Chr19:5093380 Cpe05g01434 Cpe-Chr5:10022802 5.56E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63041 PF00069 Pkinase 2.80E-54 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00624 - - bhj:120074166 602.438