Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00630 ATGTGGGATCTGAACGATTGTCCGGATGAGAGGAAGGAGGATGAATCGGAAGGGTGTTGGTCAGCGAAGACTTGGATTGAGGGAGAGGGGGAAGAGGAGAAGGGGAAAAGAGTGGGATCCGTTTCCAATTCCAGTTCTTCCGCGGTGCTTGTGGAGGATGGATCGGATGAAGATGCGCCCACCCCCAACGCATTACTCATGCAAATTAACGCACCCAGTCCTGTCACTCGCCAGTTTTTCCCACTCCAACACCCTCAAATCTCTTCTTCTTCTTCCTCTCCTTCTCCAACTACTGCTTCTACCTTCCCTCAGGCTCACTGGGTTGGGGTCAAATTTGGGCATCCCGATCCTTTTGCCGCACCTGCTCCTCCTAATTCCATCAAGTCCACCGAGATTTCCCAGCCCATTAAGAAGAGTCGCCGCGGACCCAGGTCGCGTAGCTCTCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGCCGTTGGGAGTCACATATATGGGATTGTGGAAAGCAGGTTTATCTGGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGAGCGGCCATTAAATTCCGCGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAGGAGGACTTAAAACAGATGGGAAATTTAACGAAGGAGGAATTTGTGCATGTACTTCGCCGACAGAGCACTGGGTTTCCCAGAGGAAGCTCCAAGTATAGAGGCGTAACGCTGCACAAGTGCGGAAGATGGGAGGCCAGAATGGGCCAATTTCTTGGCAAAAAGTATGTGTATTTGGGTTTGTTTGATACGGAAATTGAAGCTGCAAGGCAAAAAAGAGAGCATTGTTTAAATTCAACCGCCAATTTGGGAGATCACAGTCTTGATTTGAGTTTGGGAAATTCAAGCTCAAACCAAAACGACACCCCAAAGCCTTCCATAGATCCCCACCATTCTTCTTCTTCTTCAGCTCCTCTATCCATGGAAGACGACTGGCAACGCACTCAAGGATTTAGGCGTCCTCAGCTAAATTTGGTAGAAGAATCAAGTGGAGCAGGTGGAAATAAACATTTGAAGGCAGCAGAGGGAAGAAATAATAGGTACCTGGAGAGTGAAACGATGCAGCGTCTAAGCCAAACGCACATTCAATCACCGGCTTCATTTGAAATGCAAAGACACGCCCAATTCAGCCGGCAGATAGCGGGTGGAGATCACAATCACAATCCAACCCTCAATTATCAAATTCAGTTTGGGGGCAGCAGTAATGGTGGAGGAGGGCGAATAGGAAGCGATCTATCACTGTCTCTAAATGATCATAATCAAGTTGTTGATTATTCGGGGCCATCTCAAGCTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCCTTCCAAAAATTGGCTGCACAACAATGGGTTTCACTGTCTAATGAGACCCTCCTGA 1452 48.83 MWDLNDCPDERKEDESEGCWSAKTWIEGEGEEEKGKRVGSVSNSSSSAVLVEDGSDEDAPTPNALLMQINAPSPVTRQFFPLQHPQISSSSSSPSPTTASTFPQAHWVGVKFGHPDPFAAPAPPNSIKSTEISQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARQKREHCLNSTANLGDHSLDLSLGNSSSNQNDTPKPSIDPHHSSSSSAPLSMEDDWQRTQGFRRPQLNLVEESSGAGGNKHLKAAEGRNNRYLESETMQRLSQTHIQSPASFEMQRHAQFSRQIAGGDHNHNPTLNYQIQFGGSSNGGGGRIGSDLSLSLNDHNQVVDYSGPSQALATAAASSGFAPPSKNWLHNNGFHCLMRPS 483
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
19 5121137 5124674 - Cp4.1LG19g11140.1 Cpe19g00630 486038
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00630 483 MobiDBLite consensus disorder prediction 1 62 - -
Cpe19g00630 483 MobiDBLite consensus disorder prediction 113 149 - -
Cpe19g00630 483 CDD AP2 240 279 IPR001471 GO:0003700|GO:0006355
Cpe19g00630 483 SUPERFAMILY DNA-binding domain 148 206 IPR016177 GO:0003677
Cpe19g00630 483 CDD AP2 149 204 IPR001471 GO:0003700|GO:0006355
Cpe19g00630 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 465 - -
Cpe19g00630 483 MobiDBLite consensus disorder prediction 297 332 - -
Cpe19g00630 483 MobiDBLite consensus disorder prediction 1 38 - -
Cpe19g00630 483 SMART rav1_2 149 211 IPR001471 GO:0003700|GO:0006355
Cpe19g00630 483 SMART rav1_2 241 295 IPR001471 GO:0003700|GO:0006355
Cpe19g00630 483 ProSiteProfiles AP2/ERF domain profile. 241 279 IPR001471 GO:0003700|GO:0006355
Cpe19g00630 483 Gene3D AP2/ERF domain 148 207 IPR036955 GO:0003700|GO:0006355
Cpe19g00630 483 Gene3D AP2/ERF domain 240 286 IPR036955 GO:0003700|GO:0006355
Cpe19g00630 483 MobiDBLite consensus disorder prediction 297 334 - -
Cpe19g00630 483 SUPERFAMILY DNA-binding domain 240 279 IPR016177 GO:0003677
Cpe19g00630 483 Pfam AP2 domain 240 282 IPR001471 GO:0003700|GO:0006355
Cpe19g00630 483 Pfam AP2 domain 149 197 IPR001471 GO:0003700|GO:0006355
Cpe19g00630 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 1 465 - -
Cpe19g00630 483 ProSiteProfiles AP2/ERF domain profile. 149 205 IPR001471 GO:0003700|GO:0006355
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe10g00444 Cpe19g00630 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00565 Cpe-Chr16:6443669 Cpe19g00630 Cpe-Chr19:5121137 4.58E-78 dispersed
Cpe19g00398 Cpe-Chr19:3551661 Cpe19g00630 Cpe-Chr19:5121137 2.25E-63 dispersed
Cpe10g00444 Cpe-Chr10:2595462 Cpe19g00630 Cpe-Chr19:5121137 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51003 PF00847 AP2 6.90E-10 CL0081 Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00630 K09284 - csv:101214724 543.502