Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00640 ATGGATGATGGAACTTCTAATAGTTCAACACAATCTGCAGTCAATAATCCAGCTCCAACTGTCCATAGGCAAAATAGTACAGGAGACCATTTGACATCTATTTTATCTCCGTCTGGAATATCATCTTGGGCTAAGAGTTTTAGAAATCCACAACCGCCTGAAGCAGCAGAAAATGACTCTAAGGCAGGAAATGCTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGCTTTGGATTGCGGATGCCTTCAATGTCTCCTGTACGAGATGATACTGCTGCAGATACCAAAGCAGCAGCGCAATCTGATGTTTTCAAATCAATCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAGGCACGCCATATTGTATCTCAGAACAAACGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACTGAAAATATAATTGGTATGGGGTTTCCTGCTGGTCACATGAGCTCCGGTTTATTTGGTTTCATTGAGGGATTTTACAGAAATCATATGGAAGAAGTGATCAAATTCTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATCATTTTGTCTAAGTGCTTATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCACGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTTCTAAAGTTCTTCCATACGTCAGCAGAGGCAATTGACTATTACAATCAGAAAAGATGCGTGGATGGAAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAATACTTTGAGCGCATTTTAATACATTTCAACGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGCTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCGATTACAATTTCAAATCACAGTGCCTCTGCTTTTTATAGAGATGTGATTGGTCGTCTGTGTATCTATCTGACACATGCTTGTAAACATTTGTTTTCGTTCACTGATTACTTTGATAATGCCAAGCTGGCAAGCTATGTTTCAACAATACCTTGTAGAGATTTTGTTCTCAACAAAAAAGCATCCAAAGACAAAGGATTTGATGGTAAGCCAGAAGATTTCTGGATTAGAGCACCAAAGAAAGGATTTGTAGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTATCTGGGGACTTTAAGATTCATTTTCATGACCGCCATGGAGATTTTTATTGTTGGTTAAATACGACAATGACAGAAAACAAAGTATTATTAAGCGACACAGATCTTGATGGTTTTGATAAGAGAAAACTTCCTACTCCTGGATTCCAGGTCGAGGTTGTGATGATAGACTATAATGGTACTTTGCCAACACGATCGAAAACTAATTCTGCTGGCAAAGGATCTGATTGTCGTCCTATTCATGATCGGGTTCCAGGTCATGAGGCGGCACAATCGAGCAAAAACAAAATTCCTGAGAGTGAAGAAAATGATGATGTATTCTCTGATAGTGATGAAGAAAATGGTGACACAAAAACTGGTCTAGCTCAATCAACTTCTGAAACTGCAAAAGTTGACCATTCATCAACAGCAATTTCTTCTGATAAAATTGGGAGTTTAGCGCGTGAAACAAATCATTTGTCACTTGGGAATGAGAGAAATCTACAAATCAATGCTCCAAAAGAACCAAACATTGGTGGCATGATACAACCGTCAGGCCTCGAGACCCCAAATATGGATTCGGCAAGCGCAAGTGAATTCAAAGCAATAGCCGCTGATGCATCAGTTTTCACTTTTGGGGATGAAGAAGACTTTGATAGTGAATGA 1953 39.89 MDDGTSNSSTQSAVNNPAPTVHRQNSTGDHLTSILSPSGISSWAKSFRNPQPPEAAENDSKAGNAGMSAIARFSSGFGLRMPSMSPVRDDTAADTKAAAQSDVFKSITKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIGMGFPAGHMSSGLFGFIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKSFCLSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFHTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILIHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSASAFYRDVIGRLCIYLTHACKHLFSFTDYFDNAKLASYVSTIPCRDFVLNKKASKDKGFDGKPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKVLLSDTDLDGFDKRKLPTPGFQVEVVMIDYNGTLPTRSKTNSAGKGSDCRPIHDRVPGHEAAQSSKNKIPESEENDDVFSDSDEENGDTKTGLAQSTSETAKVDHSSTAISSDKIGSLARETNHLSLGNERNLQINAPKEPNIGGMIQPSGLETPNMDSASASEFKAIAADASVFTFGDEEDFDSE 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5169575 5176098 + Cp4.1LG19g11020.1 Cpe19g00640 486048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00640 650 MobiDBLite consensus disorder prediction 497 623 - -
Cpe19g00640 650 MobiDBLite consensus disorder prediction 553 600 - -
Cpe19g00640 650 MobiDBLite consensus disorder prediction 512 539 - -
Cpe19g00640 650 ProSiteProfiles C2 tensin-type domain profile. 321 494 IPR014020 -
Cpe19g00640 650 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 288 IPR000387 GO:0016311|GO:0016791
Cpe19g00640 650 MobiDBLite consensus disorder prediction 1 48 - -
Cpe19g00640 650 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 143 311 IPR029021 -
Cpe19g00640 650 ProSiteProfiles Phosphatase tensin-type domain profile. 135 314 IPR029023 -
Cpe19g00640 650 CDD PTP_PTEN 145 310 IPR045101 GO:0016791
Cpe19g00640 650 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 5 352 - -
Cpe19g00640 650 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 400 650 - -
Cpe19g00640 650 MobiDBLite consensus disorder prediction 1 63 - -
Cpe19g00640 650 SMART PTEN_C2_2 319 493 IPR014020 -
Cpe19g00640 650 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 400 650 - -
Cpe19g00640 650 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 5 352 - -
Cpe19g00640 650 Gene3D Protein tyrosine phosphatase superfamily 120 317 IPR029021 -
Cpe19g00640 650 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00171 Cpe-Chr4:1679284 Cpe19g00640 Cpe-Chr19:5169575 9.07E-44 dispersed
Cpe15g00475 Cpe-Chr15:5747188 Cpe19g00640 Cpe-Chr19:5169575 0 wgd
Cpe19g00640 Cpe-Chr19:5169575 Cpe04g00296 Cpe-Chr4:3737062 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00640 K01110 - csv:101213277 987.638