Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00648 ATGGAAATTATGACTCTTGAAAAGTTGAAAGAGAATGATGAACGAATTCAAAGTACAGGAGAAGCTGAACATGTTGATGAAATGCATCTCAGAACTCACAGGCATGAACATATAATTACAGTAGAAAAATCCCGAAGCTGCAGCCCAGTTCCAATAGTAAACACTAATATAATATCAAATTTCAGCAGAAAGGTACAAATTTCAAGTTTGTATGGGGGGTTGCCAGTCACAAGCTCAGAAGATCCTCCCAGTTGCATGTCCAATGAAAAATCTCAAGTTCATGATGGTGTTTTCTCTGACTCCAATGCTAATCCTACTTTTGCACAAATTATATCTAGAGAGACAACTGACACCGCTTCACCTGTGTTATCAATTGGACGAGCAAGTTTCACCAGGGATACTTCTGAGAAAGTAAGATCTGAGCCATCAGTTTCTGTGACTCAATCCCTCTCACAAGTCGAACCCCAATTTCCACTCAGATTGTCTGTGGAAAGAAAAAGTGGTATAATTGGACAACAGCCACAGAAACTTCCTGAAGTTGTTTGTTCTTCTGAGATTGAGCCCAGATCTGATTTAGGAAGTGCTGAAGCCAGAGTTCAGAAGTTGGTCGAGAACTTGAATAGCAATTCACTTGAAACTATTAGAGCTGCAATAGCTGAACTCCGAAGTCTTGCGAAACTTAATACTGATAACCGGATTATGATTACAGAACGTGGAGCAATCAGCTTTTTGGTTAAATTGCTATATTCTACAGATGCAATAGTTCAAGAGCATGCTGTTACAACACTTCTCAACCTATCAATCTATGAAGACAACAGAATTGCCATTGCTCAGGCCGATGTAATTGAACCTCTAATTCACGTCCTTGGTACAGGAACCCCTGAAGCTAAGGAGAACGCAGCTGCCACTTTCTTTAGCCTTGCTATGGTGGAGGAAAACAGGGTAAAGATTGGGAGGTCTGAGGCCATTGGGCCTCTGGTTGAACTACTAGGGAATGGGACTCCAAGGGGAAGGAAAGATGCAACAACTGCATTGTTTTATCTGTCTATGCTTCCAGAGAACAAGGTCAAGATTGTGCAAGCTGGAGCTGTACAGCATCTTGTGGAGTTGATGGATCCATCAATTGGAATGGGTGACAAGACAGTTGCTGTTCTAGCAAATCTTTCTACAATCCAGGAGGGGAAGGTTGAAATTGGTAGGGGTGGTGGGATCCCTGTGTTGGTCGAGGCTATTGAATTGGGTTCTGCTAGAGGAAAAGAGAATGCAGCAGCTGCACTACTACGGATCTGCTCATCCTCTAATAAATTTTGCATCATGGCTATCCAAGAAGGAATTATCCCACCCTTAGTGGCGTTATCTCAATCTGGAACTACGAGGGCCAAGGATAAGGCTCAGGCACTGCTTAGCCTCTTCAGAAAGCATGTGCATAGTAATGTTGAAGAAGTCCACTAA 1452 42.49 MEIMTLEKLKENDERIQSTGEAEHVDEMHLRTHRHEHIITVEKSRSCSPVPIVNTNIISNFSRKVQISSLYGGLPVTSSEDPPSCMSNEKSQVHDGVFSDSNANPTFAQIISRETTDTASPVLSIGRASFTRDTSEKVRSEPSVSVTQSLSQVEPQFPLRLSVERKSGIIGQQPQKLPEVVCSSEIEPRSDLGSAEARVQKLVENLNSNSLETIRAAIAELRSLAKLNTDNRIMITERGAISFLVKLLYSTDAIVQEHAVTTLLNLSIYEDNRIAIAQADVIEPLIHVLGTGTPEAKENAAATFFSLAMVEENRVKIGRSEAIGPLVELLGNGTPRGRKDATTALFYLSMLPENKVKIVQAGAVQHLVELMDPSIGMGDKTVAVLANLSTIQEGKVEIGRGGGIPVLVEAIELGSARGKENAAAALLRICSSSNKFCIMAIQEGIIPPLVALSQSGTTRAKDKAQALLSLFRKHVHSNVEEVH 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5228574 5232507 + Cp4.1LG19g11050.1 Cpe19g00648 486056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00648 483 Gene3D - 183 482 IPR011989 -
Cpe19g00648 483 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Cpe19g00648 483 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
Cpe19g00648 483 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 53 - -
Cpe19g00648 483 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 153 474 - -
Cpe19g00648 483 SMART arm_5 391 431 IPR000225 GO:0005515
Cpe19g00648 483 SMART arm_5 310 350 IPR000225 GO:0005515
Cpe19g00648 483 SMART arm_5 228 268 IPR000225 GO:0005515
Cpe19g00648 483 SMART arm_5 351 390 IPR000225 GO:0005515
Cpe19g00648 483 SMART arm_5 269 309 IPR000225 GO:0005515
Cpe19g00648 483 SUPERFAMILY ARM repeat 199 479 IPR016024 -
Cpe19g00648 483 PANTHER U BOX DOMAIN-CONTAINING 153 474 - -
Cpe19g00648 483 PANTHER U BOX DOMAIN-CONTAINING 1 53 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01172 Cpe19g00648 CCT
Cpe16g00136 Cpe19g00648 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00897 Cpe-Chr17:6964531 Cpe19g00648 Cpe-Chr19:5228574 8.72E-106 dispersed
Cpe19g00648 Cpe-Chr19:5228574 Cpe19g00930 Cpe-Chr19:6686208 7.96E-76 dispersed
Cpe19g00648 Cpe-Chr19:5228574 Cpe19g00650 Cpe-Chr19:5233725 4.25E-108 proximal
Cpe16g00136 Cpe-Chr16:3117721 Cpe19g00648 Cpe-Chr19:5228574 1.30E-137 wgd
Cpe19g00648 Cpe-Chr19:5228574 Cpe05g01172 Cpe-Chr5:8001943 1.74E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00648 - K08332 csv:101214725 636.721