Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00662 ATGAATAATCAAAGCCCAATTACAGTCCCTCGACGCCGCCCATGGCCTGGATTGTTCGCGTCTTCTTCTTCTTCTTCTTCTTCCTCCAAAGCTTTGGGAACTTGGTTGGGTGAGGACGCCAATTGCATGGAACACTTGTTGGTTCACTGCGCCAACGCTATTGAATCCAACGACGCTACTCTCGCCCAACAAATCCTTTGGGTCCTCAACAACATTGCCACTCCTGATGGCGACTCCAACCAACGCCTTGCCTCTGCTTTCCTACGCGCTCTTGTAACACGCGCTGCCAACATTGGCAGCTGTAAAATCCTCGCTGCCATCACCACCGCAGCTACCTCCTCCTCCCTAACTACCCAATCCTTCTCCCTTATGGACCTCGCCGCCTTCGTCGACTTAACCCCCTGGCATCGCTTCGGCTTCACGACTGCAAATGCGGCGATTCTCGACGCCATCGAAGGCTACTCTGCCGTCCATGTCGTCGATTTCAGCTTGATGCATTGCATGCAAATCCCCACTCTCATTGACGCGATCGCTACTCGTTTCGAGTTCCCCCCTCTACTCAAACTCACCACGGTTGTCGTAAAACACACGCCGCCCATTCTCGAGCTGTCTTACGAGGAATTAGGAGCGAAATTGGTGAATTTTGCAAGGTCAAAAAACGTGAGAATGGAATATAGATTTGTGGAGTCTTGCTACACCGATGGATTTTCCAATTTAATCCAAGAAATTCGAGTGCAAAATTTAATTTACGGACCCGAAAGTAAGGAAGCGCTGATTTTAAACTGTCACATGATGCTCCATTACATCCCTGAAGAGACATTAAACCCAAACCCATCTCCCAATTTCGACATGTTGTCTTCAACTCGTTCGATGTTTCTCAAGGAAATCCGAAGCTTAGAGCCAGCGATTGTGATTCTAGTCGATGAGGAAGCCGATTTCACGGCGAGTAAAATGGTGAGTCGATTGAGATCGGCGTTTAATTACTTATGGATACCGTACGACTCGATGGATTCGATTCTTCCTAGGAACAGCAAGCACAGGGAATGGTACGAGGCCGGGATTTGTCGGAAGATTCAGAATGTGATTGCTGAGGAGGGGATTGAGAGAGTGGAACGATTGGAGCCGAAGACGCGGTGGGTTCAACGGATGGTGAACTCCAAATTCCGAGGGGTTGGGTTCGGAGAGGACGCGGTTTCGGAGGTGAAGACGATGCTCGATGAGCATGCAGCAGGATGGGGGTTGAAGAAGGAAGACAACCACCTCCTCCTCACGTGGAAAGGCCACGACGTCGTTTTCGCCACGGCTTGGGTACCTTACTAA 1320 50.08 MNNQSPITVPRRRPWPGLFASSSSSSSSSKALGTWLGEDANCMEHLLVHCANAIESNDATLAQQILWVLNNIATPDGDSNQRLASAFLRALVTRAANIGSCKILAAITTAATSSSLTTQSFSLMDLAAFVDLTPWHRFGFTTANAAILDAIEGYSAVHVVDFSLMHCMQIPTLIDAIATRFEFPPLLKLTTVVVKHTPPILELSYEELGAKLVNFARSKNVRMEYRFVESCYTDGFSNLIQEIRVQNLIYGPESKEALILNCHMMLHYIPEETLNPNPSPNFDMLSSTRSMFLKEIRSLEPAIVILVDEEADFTASKMVSRLRSAFNYLWIPYDSMDSILPRNSKHREWYEAGICRKIQNVIAEEGIERVERLEPKTRWVQRMVNSKFRGVGFGEDAVSEVKTMLDEHAAGWGLKKEDNHLLLTWKGHDVVFATAWVPY 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5299223 5300542 - Cp4.1LG19g10720.1 Cpe19g00662 486070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00662 439 Pfam GRAS domain family 43 436 IPR005202 -
Cpe19g00662 439 ProSiteProfiles GRAS family profile. 34 437 IPR005202 -
Cpe19g00662 439 MobiDBLite consensus disorder prediction 1 28 - -
Cpe19g00662 439 PANTHER SCARECROW-LIKE PROTEIN 32 12 437 - -
Cpe19g00662 439 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 437 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00472 Cpe19g00662 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00765 Cpe-Chr15:7851120 Cpe19g00662 Cpe-Chr19:5299223 2.80E-108 dispersed
Cpe19g00662 Cpe-Chr19:5299223 Cpe10g00479 Cpe-Chr10:2826893 6.90E-53 dispersed
Cpe19g00662 Cpe-Chr19:5299223 Cpe19g00670 Cpe-Chr19:5347677 3.07E-54 proximal
Cpe10g00472 Cpe-Chr10:2774827 Cpe19g00662 Cpe-Chr19:5299223 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51006 PF03514 GRAS 2.20E-94 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00662 - - cmos:111453455 693.73