Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe19g00663 | ATGAGCTGCAACGGTTGCCGAGTTCTCCGAAAGGGCTGCAGTGAGTCCTGTATTCTCCGCCCTTGCTTGCAGTGGATTGACACCTCTGAAGCCCAAGGTCACGCTACTGTCTTTGTCGCTAAGTTCTTCGGCCGCGCCGGTCTTATGTCTTTCATCTCCGCCGTCCCTGAATCTCAACGACCTTCTTTGTTTCAGTCTTTGCTGTTTGAAGCCTGTGGTCGTACTGTCAATCCGGTCAACGGCGCCGTTGGTCTTCTCTGGACTGGAAACTGGCATATCTGTCAGGCGGCGGTGGAGACTGTGTTACGAGGCGGTACGTTGCGGCCGATGAATGAGTTTCTCGCCGCTGGATCTCCTAATCCGGCTTCCGATGAAACATCCGAGGCTGAAGTCGCCTGTACCGACATGTGGAAGCTTCGAGATTCTTATCCAAATTCTCGATTCTCCAACTCCCGATCTAGACTTTCCCCAAAACGTAAACGATCCGAGGAATCCACTAAAAACCAACTGAACGACTTAGATCTCCGTTTAACACCGAATTTTCCGGCGAAATCAACCCGGCGTGCCGCTACTCCGTCGATGAATTCCGAGGAATCCGAAACCACTACGTGCTTTGAAAGCGGCGGCTTAATTGATCATCATCATCGCCACTACCATCCAGAAGAACTGGTACCGGAACGGAAACTTCTCAATTTATTCGTCTAA | 705 | 51.21 | MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHICQAAVETVLRGGTLRPMNEFLAAGSPNPASDETSEAEVACTDMWKLRDSYPNSRFSNSRSRLSPKRKRSEESTKNQLNDLDLRLTPNFPAKSTRRAATPSMNSEESETTTCFESGGLIDHHHRHYHPEELVPERKLLNLFV | 234 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 5304244 | 5306119 | - | Cp4.1LG19g10750.1 | Cpe19g00663 | 486071 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe19g00663 | 234 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 234 | - | - | |
| Cpe19g00663 | 234 | MobiDBLite | consensus disorder prediction | 144 | 203 | - | - | |
| Cpe19g00663 | 234 | MobiDBLite | consensus disorder prediction | 184 | 203 | - | - | |
| Cpe19g00663 | 234 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - | |
| Cpe19g00663 | 234 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN | 1 | 234 | - | - | |
| Cpe19g00663 | 234 | MobiDBLite | consensus disorder prediction | 156 | 170 | - | - | |
| Cpe19g00663 | 234 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 101 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe04g01407 | Cpe-Chr4:11336629 | Cpe19g00663 | Cpe-Chr19:5304244 | 7.81E-50 | dispersed | |
| Cpe09g00304 | Cpe-Chr9:1789293 | Cpe19g00663 | Cpe-Chr19:5304244 | 1.77E-47 | dispersed | |
| Cpe18g00757 | Cpe-Chr18:7279054 | Cpe19g00663 | Cpe-Chr19:5304244 | 1.69E-50 | dispersed | |
| Cpe19g00663 | Cpe-Chr19:5304244 | Cpe16g00556 | Cpe-Chr16:6368390 | 1.52E-10 | dispersed | |
| Cpe19g00663 | Cpe-Chr19:5304244 | Cpe02g00212 | Cpe-Chr2:1091004 | 4.60E-64 | wgd | |
| Cpe19g00663 | Cpe-Chr19:5304244 | Cpe06g00193 | Cpe-Chr6:1035430 | 7.03E-58 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 51007 | PF03195 | LOB | 1.90E-25 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe19g00663 | - | - | csv:101206615 | 401.364 |