Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00670 ATGGATACCTTGTTTCGGCTTGTCAATCTTCAGTCCGAACAATCTTACAACTCCAGTAGAAGTAGAACCAATTCTAGCAGCTCCAGATCGTCTAGACAAAACCAATATCATTACCATCAACAGGAAGACGAAGAATGCTACAACGTTCTCATGGATGAGGAAGATTTCTCATCGTCTAGTAATTCTAGACAATACTACAATCCTTACCTTCCCAACCCATCTTCCACCGTCTCCACCACGCCCACCGCCACCACCCCAACCCCGATCGATCAATTCTCATTCGTCTCCCCCGCTCCGGATTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTGGAAACCGCCAGGGCCATTTCTGACAGGAATAGTGCTCGTGTTCAGCAGCTGATGTGGATGCTAAACGAACTTAGCTCCCCCTATGGGGATACGGATCAAAAGCTAGCTGCCTATTTCCTGCAGGCCTTGTTTACCCGCATGACTGATTCCGGCGACCGTAATTATCGCGCTTTGTCCTCCGCCTCAGAGAAAACATGCTCATTCGAATCAACTAGGAAAATGATGCTCAAGTTTCAGGAGGTTAGTCCCTGGACCACTTTTGGGCATGTTTCTTGCAATGGCGCATTAATTGAAGCCTTAGAAGGCGAATCAAAGCTACACATAATCGATATCAGTAACACGTATTGCACTCAGTGGCCCACTTTGCTAGAAGCCCTCGCGACTCGTACCGACGATACGCCCCACCTACGCCTCACAACTGTCGTCATCACTAAGCCCGGCGATGGAAGTGGAGTAGCCGCATCTCAAAAAGTAATGAAGGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTCAAATTCCACACGCTATACCATTCCGGTGACCTTTCAGATTTGGACTTGGCCAAATTAGACATCAAAGAAGACGAGGCACTCGCCGTCAACTGCATCGGAGCGTTACGTTCCGTGGCGGCAGTTGATAACCGCCGAGATTTCTTGATAGCATCTTTCCGCAGTTTACGGCCGCGGATAATCACGGTGATAGAAGAGGAAGCCGACCTCGACGTAGGCGTCGATGGGATTGAATTTCTGAGTGGGTTCCAAGAATGTCTGCGTTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCACGAGGACAAGCAACGAGCGGTTGATGCTTGAGAGAGCAGCCGGTAGGGCAATCGTGGACCTGGTGGCTTGCTCGGCAGCGGAGTCGGTGGAGAGAAGGGAATCGGCAGCGCGGTGGGCACAGCGGTTGCATGGAAGCGGTTTCAGTCCGCTGATATTCAGCGACGAAGTATGCGACGACGTAAGGGCACTATTGAGGAGGTACAAGGAAGGGTGGGCAATGACACAGAGCTCAGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAAACCTTGA 1479 50.57 MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSSNSRQYYNPYLPNPSSTVSTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKTCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALRSVAAVDNRRDFLIASFRSLRPRIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWKP 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5347677 5349155 - Cp4.1LG19g10730.1 Cpe19g00670 486078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00670 492 MobiDBLite consensus disorder prediction 58 84 - -
Cpe19g00670 492 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 491 IPR005202 -
Cpe19g00670 492 Pfam GRAS domain family 113 491 IPR005202 -
Cpe19g00670 492 PANTHER PROTEIN SHORT-ROOT 1 491 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Cpe19g00670 492 MobiDBLite consensus disorder prediction 13 35 - -
Cpe19g00670 492 ProSiteProfiles GRAS family profile. 101 491 IPR005202 -
Cpe19g00670 492 MobiDBLite consensus disorder prediction 13 41 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01143 Cpe-Chr5:7751427 Cpe19g00670 Cpe-Chr19:5347677 2.73E-24 dispersed
Cpe10g00472 Cpe-Chr10:2774827 Cpe19g00670 Cpe-Chr19:5347677 1.11E-52 dispersed
Cpe12g00520 Cpe-Chr12:5328514 Cpe19g00670 Cpe-Chr19:5347677 1.08E-150 dispersed
Cpe17g01083 Cpe-Chr17:8221440 Cpe19g00670 Cpe-Chr19:5347677 6.63E-152 dispersed
Cpe19g00670 Cpe-Chr19:5347677 Cpe05g01400 Cpe-Chr5:9850883 1.05E-59 dispersed
Cpe19g00662 Cpe-Chr19:5299223 Cpe19g00670 Cpe-Chr19:5347677 3.07E-54 proximal
Cpe10g00479 Cpe-Chr10:2826893 Cpe19g00670 Cpe-Chr19:5347677 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51010 PF03514 GRAS 2.00E-102 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00670 - - csv:101204711 853.973