Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00671 ATGGGGAAGAAACAGCACAGTAAAGACCGTTTGTTTATTACGAAAACTGAATGGGCCACTGAATGGGGCGGAGCCAAATCCAAGGACAATCAAACCCCTTTCAAGCGGCTTCCTTTTTATTGCTGCGCGCTTACATTTACACCCTTTGAGGACCCTGTATGTACTGCCGATGGCAGCATCTTCGAGATAATGAATATCATCCCTTATATTCGGAAGTACGGTAAAAATCCTGTTACTGGAGCTCCCCTGAAGCAGGAGGATCTTATTCCTCTGATTTTCCACAAGAACTCTGAAGGTGAGTTCCAGTGCCCTGTACTAAACAAAGTTTTTACCGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTCTTCTGCTACGAGGCAATTAAAGAACTAAATATCAAGACAAAAAACTGGAAGGAACTTCTCACTGATGAACCATTTAGTAGGGAAGATATTATAACCATTCAGAACCCTACTGCACTTGATACTAAGGTTCTCCTGGATTTTGATCATGTGAAAAAAAGCCTGAAAGTTGATAATGAAGAACTTCAGAAAATGAAATCAGATCCAACATATAACATAAATGTGTCGGGGGACATCAAGCAGATGTTGAAGGAACTTGGAACAGAAAAAGGAAGGCAAACTGCACTTCATGGGGGAGGTGGTGGCAAGGCACAGAAAGAAAGGGCAGCTGCCCTTGCTGCAATTTTAGAAGCTAGGTCACGCATTAAAGAAAATTCCAAGGAAAATGCAAAAGGAGAGGAGACACCTACTCAGGCATTTAGTATTGTGGATGCTGCATCTGCTTCAGTACATGGAAGAAGTGCAGCTGCTGCGAAAGCTGCTCCTAGTGAAAAAACTGCAGCTCGAATTGCCATGCACATGGCGGGTGAGAGGGCACCGGTGAATGCTAAGATGGTAAAGAGTCGTTACACTACTGGGGCTGCATCCCGATCCTTTACATCTACATCTTACGATCCTGTTACAAAGAATGAACACGAATATATCAAGGTTGAGAAAAATCCAAAGAAGAAAGGATATGTTCAGTTGCACACAACTCATGGAGATTTGAATATTGAGCTGCATTGTGATATTACTCCAAGGGCATGTGAGAATTTCATCACACTTTGTGAAAATGGCTACTACAATGGAGTAGCTTTTCATAGAAGTATTAGGAATTTTATGATTCAAGGTGGCGATCCAACTGGTACTGGGAGAGGAGGTGAATCTATATGGGGAAAGCCCTTCAAAGATGAACTCAACTCCAAGTTGCTTCATTCTGGAAGGGGAATTGTCAGTATGGCAAATAGTGGTCCCCACACTAATGGTTCCCAGTTCTTTATTCTATACAAATCTGCCAATCATTTAAACTTCAAGCATACTGTATTTGGCGGTGTTGTTGGTGGTTTGACTGCTTTGGCAGCTATGGAAAAGGTTCCTGTTGATGACAATGATCGGCCGCTGGAGGAGATCAAGATTACAAGTGTCACAGTCTTTGTCAATCCATACTCGGAACCCGATGAAGAAGAAGAAAACAAGCAAAAAGACGAGAAGAATGTTGAAGATGAAGAAAACGATAAGGTTGGATCATGGTATAGCAACCCAGGCACCGGGGCAGCTGAAAATGGAGCTGCAGGTGGCGGTGTAGGGAAATACCTTAAAGCAAGGAATGCCCAATCCAAACCCCCTGCTGTTGATGCTAGTCTAGGAGCAACTACCTCGACCAAGAAAAGGACAGCTGCAGGGGAGTTCAAAGACTTCTCTTCGTGGTAA 1782 43.15 MGKKQHSKDRLFITKTEWATEWGGAKSKDNQTPFKRLPFYCCALTFTPFEDPVCTADGSIFEIMNIIPYIRKYGKNPVTGAPLKQEDLIPLIFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAIKELNIKTKNWKELLTDEPFSREDIITIQNPTALDTKVLLDFDHVKKSLKVDNEELQKMKSDPTYNINVSGDIKQMLKELGTEKGRQTALHGGGGGKAQKERAAALAAILEARSRIKENSKENAKGEETPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCENGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLLHSGRGIVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTALAAMEKVPVDDNDRPLEEIKITSVTVFVNPYSEPDEEEENKQKDEKNVEDEENDKVGSWYSNPGTGAAENGAAGGGVGKYLKARNAQSKPPAVDASLGATTSTKKRTAAGEFKDFSSW 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5352480 5356943 - Cp4.1LG19g10800.1 Cpe19g00671 486079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00671 593 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Cpe19g00671 593 CDD cyclophilin_RING 350 508 - -
Cpe19g00671 593 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Cpe19g00671 593 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Cpe19g00671 593 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Cpe19g00671 593 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 591 - -
Cpe19g00671 593 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 591 IPR044666 -
Cpe19g00671 593 Gene3D - 330 515 IPR029000 -
Cpe19g00671 593 SUPERFAMILY Cyclophilin-like 350 519 IPR029000 -
Cpe19g00671 593 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 95 IPR013083 -
Cpe19g00671 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Cpe19g00671 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Cpe19g00671 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Cpe19g00671 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Cpe19g00671 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Cpe19g00671 593 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Cpe19g00671 593 MobiDBLite consensus disorder prediction 509 531 - -
Cpe19g00671 593 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 501 IPR002130 GO:0000413|GO:0003755
Cpe19g00671 593 SUPERFAMILY RING/U-box 37 104 - -
Cpe19g00671 593 MobiDBLite consensus disorder prediction 503 593 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00480 Cpe19g00671 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00671 Cpe-Chr19:5352480 Cpe04g00267 Cpe-Chr4:3341512 2.81E-33 dispersed
Cpe02g00272 Cpe-Chr2:1409509 Cpe19g00671 Cpe-Chr19:5352480 4.21E-44 transposed
Cpe10g00480 Cpe-Chr10:2830884 Cpe19g00671 Cpe-Chr19:5352480 0 wgd
Cpe16g00113 Cpe-Chr16:2241725 Cpe19g00671 Cpe-Chr19:5352480 5.18E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00671 K10598 - csv:101204462 1053.12