Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00675 ATGGAGAGGTTTTTGGACGAGAATTTTGGAGGTGTCAAACCCAAAAACTCGTCTGACGAGGTGCTCCAGAAGTGGAGGGATCTTTGTGGAGTGGTTAAGAACCCTAAAAGGAGGTTTCGCTTTACCGCCAATCTCTCCAAGCGTGGCGAAGCTGCTGCTATGCGCCAGAGTAATCAGGAGAAGTTGAGGGTCGCAGTTTTAGTCTCAAAAGCTGCATTTCAATTCATCCAAGGTATGCAACCAAGTGATTATAATGTTCCGGAGGATGTCAAAGCTGCAGGTTTCCATATTTGTGCTGATGAACTCGGGGCAATTGTTGAAGGCCATGATCCAAAGAAGTTAAAACATCATGGTGGTGTTGAAGGAATTGCTCAGAAGCTCTGTACATCAACAACAACTGGGCTTAATGGTGATGCTGATGCACTCAACCGTAGGCAAGAGATTTATGGAGTTAATAAATTTGCTGAGAGTGAACAGAGGAGTTTCTTAGTGTTCGTTTGGGAGGCACTCCAAGATATGACTCTCATGATCCTTGGACTCTGTGCCTTCGTCTCTTTGGTAGTTGGCATAATAACTGAAGGATGGCCGCATGGGGCTCATGATGGCCTTGGAATTGTTGCCAGTATCTTGTTAGTTGTATTTGTGACAGCAACTAGTGATTATCGACAATCCTTGCAGTTCAAGGACTTGGATAAGGAGAAAAAGAAGATATCAATTCAGGTTACAAGGAATGATTATAGACAGAAAATGTCAATTTATGATTTGCTTCCTGGAGATATTGTACACCTGTCTCTTGGGGACCAAGTTCCTGCAGATGGACTATTTGTTTCAGGGTTTTCTGTGTTGATTGATGAGTCAAGTTTGACTGGAGAAAGTGAGCCAGTGATGGTGAGTGCAGAAAGCCCTTTTCTTTTATCAGGAACTAAAGTTCAAGATGGATCCTGCAAGATGATGATCACTACTGTTGGGATGAGAACCCAATGGGGTAAGTTGATGGCCACTCTTAGTGAAGGTGGAGATGATGAAACTCCATTGCAGGTGAAATTGAATGGAGTGGCAACAATTATTGGGAAAATAGGTCTTTTCTTTGCCATCATCACATTCTCTGTGTTGGTTCAAGGATTGGTTAGCCAGAAACTTCGAGAAGGGACTCACTGGAACTGGTCAGGAGATGACGCATTAGAGATATTGGAATTCTTTGCTGTTGCCGTCACAATTGTTGTTGTTGCTGTGCCAGAGGGGCTTCCTTTGGCTGTGACATTAAGCCTTGCCTTTGCCATGAAGAAAATGATGAATGATAAAGCACTTGTCCGTCACCTTGCAGCTTGTGAAACTATGGGTTCTGCCACAACTATTTGTAGTGACAAAACTGGAACAATCACTACAAATCACATGACAGTGGTCAAATCATGCATTTGCATGAATGTCAAAGAATCAAGTAACAATCCATCAAGCTTCTGCTCTGACCTTCCAACCTCCGTTGTCAAGCTTCTGCTACAATCAATATTCAACAACACTGGGGGAGAAGTTGTAATCAACAAAAATGGCAAACGTGAGTTGTTGGGCACTCCCACTGAGACTGCATTATTAGAGTTTGGTCTTTCACTCGGTGGTGATTTTCAGGCTGAGAGACAGGCAGGTAAACTTATTAAAGTTGAGCCATTCAATTCTTTGAAAAAGCGGATGGGTGTTGTCCTACAATTTCCTGAAGGTGGTTTCCGAGCTCACACTAAAGGTGCTTCAGAAATAGTGTTGGCTGCCTGTGACAAGGTGATCAACTCGAGTGGTGAGGTTGTTCCTTTAGATGAAACTTCCACCAAACATCTCAATGTTATTATCGATCAATTTGCTGGTGAGGCTCTCCGAACACTTTGCCTTGCCTATATGGAACTGGAAAATGGATTCTCTGTCAATGATCCTATTCCCGTTTCTGGTTATACCTGCATTGGTATTGTGGGTATTAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCTGTTGCAGTTTGTCGTTCAGCTGGTATTACTGTACGAATGGTTACTGGCGACAATATTAATACTGCAAAAGCTATTGCTAAGGAATGTGGAATCCTCACCGATGATGGCATAGCCATTGAGGGTCCGGATTTCAGAGAGAAGACGCAAGAGGAATTGCTTAAAATTATTCCCAAAATTCAGGTGATGGCTCGATCCTCACCTCTAGATAAGCACACTCTGGTCAAGCATTTGCGGACCACCTTTGATGAAGTTGTTGCAGTCGCCAAAGAGAGTGCTGATGTGATCATTCTTGATGATAATTTCTCTACTATCGTGACTGTGGGAAAATGGGGTCGTTCTGTTTACATAAATATTCAAAAATTCGTGCAATTCCAGCTGACTGTCAACATTGTGGCGTTGATTGTGAACTTCTCTTCAGCTTGTTTGACAGGTAATGCACCCCTTACTGCAGTCCAGCTGTTGTGGGTGAACATGATTATGGACACACTTGGAGCTTTGGCTCTCGCCACTGAGCCTCCGAATGATGAGTTGATGAAGCGCTTACCCGTTGGAAGGAGAGGAAGTTTTATCAGCAATGTCATGTGGAGAAATATCTTGGGGCAGTCCGTGTATCAGCTCTCAGTGATATGGTTTTTACAGGCTAAAGGGAAAGAAGCGTTTGATCTAGACAGCACAGATTCTGATCAGATACTGAATACCCTCATCTTCAATTCCTTTGTGTTCTGTCAGATTTTTAACGAAATAAGTTCCAGGGAGATGGACAAAATCGATGTCTTTCGAGGCATACTTAATAACTATGTATTCGTTGCTGTCATTGGTTCAACCGTTCTGTTCCAAATACTAATCATCGAATTTTTGGGAACATTTGCAAGCACAACCCCTCTGACTTCATCGGAGTGGCTGTTTAGCGTGGTGGTTGGATTTCTAGGCATGCCCATTGCTGCTTTCTTGAAGACTATTCCAGTATAA 2964 43.05 MERFLDENFGGVKPKNSSDEVLQKWRDLCGVVKNPKRRFRFTANLSKRGEAAAMRQSNQEKLRVAVLVSKAAFQFIQGMQPSDYNVPEDVKAAGFHICADELGAIVEGHDPKKLKHHGGVEGIAQKLCTSTTTGLNGDADALNRRQEIYGVNKFAESEQRSFLVFVWEALQDMTLMILGLCAFVSLVVGIITEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNDYRQKMSIYDLLPGDIVHLSLGDQVPADGLFVSGFSVLIDESSLTGESEPVMVSAESPFLLSGTKVQDGSCKMMITTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAIITFSVLVQGLVSQKLREGTHWNWSGDDALEILEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTITTNHMTVVKSCICMNVKESSNNPSSFCSDLPTSVVKLLLQSIFNNTGGEVVINKNGKRELLGTPTETALLEFGLSLGGDFQAERQAGKLIKVEPFNSLKKRMGVVLQFPEGGFRAHTKGASEIVLAACDKVINSSGEVVPLDETSTKHLNVIIDQFAGEALRTLCLAYMELENGFSVNDPIPVSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIAKECGILTDDGIAIEGPDFREKTQEELLKIIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVAKESADVIILDDNFSTIVTVGKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRLPVGRRGSFISNVMWRNILGQSVYQLSVIWFLQAKGKEAFDLDSTDSDQILNTLIFNSFVFCQIFNEISSREMDKIDVFRGILNNYVFVAVIGSTVLFQILIIEFLGTFASTTPLTSSEWLFSVVVGFLGMPIAAFLKTIPV 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5367407 5371829 + Cp4.1LG19g10650.1 Cpe19g00675 486083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00675 987 PANTHER CALCIUM-TRANSPORTING ATPASE 1 5 752 - -
Cpe19g00675 987 Gene3D - 168 449 - -
Cpe19g00675 987 PANTHER CATION TRANSPORTING ATPASE 752 986 - -
Cpe19g00675 987 Gene3D - 751 986 - -
Cpe19g00675 987 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Cpe19g00675 987 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 110 752 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cpe19g00675 987 Pfam Cation transport ATPase (P-type) 513 591 - -
Cpe19g00675 987 PANTHER CATION TRANSPORTING ATPASE 5 752 - -
Cpe19g00675 987 Gene3D - 140 336 - -
Cpe19g00675 987 SUPERFAMILY HAD-like 646 772 IPR036412 -
Cpe19g00675 987 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Cpe19g00675 987 Gene3D - 463 657 IPR023299 GO:0000166
Cpe19g00675 987 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Cpe19g00675 987 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Cpe19g00675 987 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Cpe19g00675 987 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Cpe19g00675 987 PRINTS P-type cation-transporting ATPase superfamily signature 750 762 - -
Cpe19g00675 987 Pfam Cation transporter/ATPase, N-terminus 116 185 IPR004014 -
Cpe19g00675 987 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 986 IPR023298 -
Cpe19g00675 987 Gene3D - 450 750 IPR023214 -
Cpe19g00675 987 PRINTS Sodium/potassium-transporting ATPase signature 446 467 - -
Cpe19g00675 987 PRINTS Sodium/potassium-transporting ATPase signature 575 593 - -
Cpe19g00675 987 PRINTS Sodium/potassium-transporting ATPase signature 203 223 - -
Cpe19g00675 987 Gene3D - 17 77 - -
Cpe19g00675 987 Pfam Cation transporting ATPase, C-terminus 811 984 IPR006068 -
Cpe19g00675 987 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Cpe19g00675 987 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 545 698 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe19g00675 987 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 394 479 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe19g00675 987 Pfam E1-E2 ATPase 237 431 - -
Cpe19g00675 987 SMART Cation_ATPase_N_a_2 114 190 IPR004014 -
Cpe19g00675 987 PANTHER CALCIUM-TRANSPORTING ATPASE 1 752 986 - -
Cpe19g00675 987 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 662 IPR023299 GO:0000166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00519 Cpe-Chr13:5307701 Cpe19g00675 Cpe-Chr19:5367407 0 dispersed
Cpe17g00875 Cpe-Chr17:6800597 Cpe19g00675 Cpe-Chr19:5367407 0 dispersed
Cpe20g00800 Cpe-Chr20:7185035 Cpe19g00675 Cpe-Chr19:5367407 2.87E-06 dispersed
Cpe19g00675 Cpe-Chr19:5367407 Cpe02g00220 Cpe-Chr2:1131171 0 wgd
Cpe19g00675 Cpe-Chr19:5367407 Cpe06g00200 Cpe-Chr6:1073086 8.07E-20 wgd
Cpe19g00675 Cpe-Chr19:5367407 Cpe07g00522 Cpe-Chr7:3438647 6.30E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00675 K01537 - csv:101212315 1790.78