Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00692 ATGAATAATGTTAATGGCAACAACTGTAACTGGTTAGGTTTCTCTGTGTCCCCTAACGTTAACATGGAGCTTTCTTCTTCCTCTGCTGCTGCTGCCTCCCCTTCAATTCCTGCAAATCTTTTTCACTCCCCATCTCAGTATAACTATGGCATTTACTATGGTGTTGATGGAGAACATGGTGGTTTTTATTCACCATTGTCTGTCATGCCGCTCAAGTCTGATGGTTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCACCCAGAAGCGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCTACTATGGGGTCCCATCACTATGAAAGCAATGCCAGGGAAGCTATTGCTCTCAGCTTAGACAGTATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAACCCTATGCACATTTTTCATCCTTAAGAAGCCGTGAAGTGATGCTTCAAGACTCGAAGGTTATTCTGCCCGATGGGTGCAATCTGCAGCAGGAGCAACAGCAGCAGCACCCAACAGTGGCAGAGAGTGAGATTTCTGGTATGAAGAATTGGGCTGTTCCTAGGGGCTATGCTGCCACTGACAATAGTTCCTTCGAACAGAAGATGGTGAGTTTCATGAGTGAAAATGGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGTCCCAGCTCTCAATCAAGCTGCGTCACAGTCACACAGCATGTCTCACCTGCCATGGGTGACTGTTCTGCCATGGATTCAAAGAAAAGAATCCATGAGAAGTTGGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGTCAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGGAGGTTATGATATGGAAGAGAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTACTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAGAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGTAGGCAGGAATATGTTGCTCATCTGAGAAGGCAAGCACATTTTTACCATGAGAGAAGCAGCGGATTCTCAAGGGGGGCCTCGATTTACAGAGGCGTAACAAGTGAATCTCTGTCTGAAGTTTCTCTGTTCCTATTTGTATTATTTTGCAGACATCATCAACATGGAAGATGGCAGGCTCGGATAGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCGGCCGAGGCCTACGACATAGCAGCCATAAAATTTCGAGGAATGAATGCAGTTACTAATTTTGATATCACAAGGTATGACGTCGAGCGGATCATTGCTAGCAACACGCTTCTTAGTGGCGATGTAGCTAAAAGAAAGCAGCAGCCGGATTTTAATAATGAATCTCTTAGTGAAAGCCCTCCTACTCACAACAGCAATGCAGAGGCCTCTATGCCTTTGCCCTCACAGAGTAGTCAAAGTGAATCAGACTGGAAGATGGCTCTCTATCAGTCATCCCAGCAGCAGCTCATTCCAAAGCCTCGGTTGTTGTCTGCAATAACCGACGATGGTTCACAGCTAGGAGTCGAAGACTCGGCCAAAATGATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACCAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCAATGGTTTTCGGAATGCCTCAACCGACATCTAGGCCGTTTGCTGCCCCAGCTAGTAATATGAACTCCTCCTCCTGGATTGCATCTGCCCAACAGTTGAGGGCAGCCAATTGTATGAGCCAGTTGCCAGTTTTTGCTGGGTGGACTGATACTTAA 1965 46.01 MNNVNGNNCNWLGFSVSPNVNMELSSSSAAAASPSIPANLFHSPSQYNYGIYYGVDGEHGGFYSPLSVMPLKSDGSICSMEALSRQHPEAVSSSTPKLEDFFGGATMGSHHYESNAREAIALSLDSIFCHQNPTHEPNNQPYAHFSSLRSREVMLQDSKVILPDGCNLQQEQQQQHPTVAESEISGMKNWAVPRGYAATDNSSFEQKMVSFMSENGGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTVTQHVSPAMGDCSAMDSKKRIHEKLDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRQAHFYHERSSGFSRGASIYRGVTSESLSEVSLFLFVLFCRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDVAKRKQQPDFNNESLSESPPTHNSNAEASMPLPSQSSQSESDWKMALYQSSQQQLIPKPRLLSAITDDGSQLGVEDSAKMMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQPTSRPFAAPASNMNSSSWIASAQQLRAANCMSQLPVFAGWTDT 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5444619 5447686 + Cp4.1LG19g10640.1 Cpe19g00692 486100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00692 654 SUPERFAMILY DNA-binding domain 422 475 IPR016177 GO:0003677
Cpe19g00692 654 CDD AP2 293 357 IPR001471 GO:0003700|GO:0006355
Cpe19g00692 654 CDD AP2 399 476 IPR001471 GO:0003700|GO:0006355
Cpe19g00692 654 ProSiteProfiles AP2/ERF domain profile. 400 474 IPR001471 GO:0003700|GO:0006355
Cpe19g00692 654 Coils Coil 358 378 - -
Cpe19g00692 654 Pfam AP2 domain 294 349 IPR001471 GO:0003700|GO:0006355
Cpe19g00692 654 Pfam AP2 domain 422 466 IPR001471 GO:0003700|GO:0006355
Cpe19g00692 654 ProSiteProfiles AP2/ERF domain profile. 294 357 IPR001471 GO:0003700|GO:0006355
Cpe19g00692 654 PRINTS Ethylene responsive element binding protein signature 339 359 IPR001471 GO:0003700|GO:0006355
Cpe19g00692 654 PRINTS Ethylene responsive element binding protein signature 295 306 IPR001471 GO:0003700|GO:0006355
Cpe19g00692 654 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 8 612 - -
Cpe19g00692 654 MobiDBLite consensus disorder prediction 501 535 - -
Cpe19g00692 654 SUPERFAMILY DNA-binding domain 293 359 IPR016177 GO:0003677
Cpe19g00692 654 MobiDBLite consensus disorder prediction 495 535 - -
Cpe19g00692 654 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 612 - -
Cpe19g00692 654 Gene3D AP2/ERF domain 400 476 IPR036955 GO:0003700|GO:0006355
Cpe19g00692 654 Gene3D AP2/ERF domain 293 359 IPR036955 GO:0003700|GO:0006355
Cpe19g00692 654 SMART rav1_2 294 363 IPR001471 GO:0003700|GO:0006355
Cpe19g00692 654 SMART rav1_2 416 480 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00890 Cpe-Chr16:8370460 Cpe19g00692 Cpe-Chr19:5444619 3.76E-108 dispersed
Cpe10g00499 Cpe-Chr10:2922938 Cpe19g00692 Cpe-Chr19:5444619 0 wgd
Cpe11g00106 Cpe-Chr11:586597 Cpe19g00692 Cpe-Chr19:5444619 0 wgd
Cpe19g00692 Cpe-Chr19:5444619 Cpe02g00238 Cpe-Chr2:1220356 2.85E-115 wgd
Cpe19g00692 Cpe-Chr19:5444619 Cpe06g00218 Cpe-Chr6:1159931 2.36E-32 wgd
Cpe19g00692 Cpe-Chr19:5444619 Cpe07g00532 Cpe-Chr7:3517977 5.69E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51014 PF00847 AP2 4.30E-10 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00692 K09285 - csv:101203323 1075.08