Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00701 ATGGGTTTTGACGATCTTCCTAATACGGGTCTTCTATTGGGATTGGGGCTAACGCTTCAATCCAAGCCCGCCTGCCTTTCTCAAAAACCCAACAACCCGGTCGATTTGTTCAGTTTCCCCGCCGTCGAATCCGAGCCGTCCTTAACTTTGGGGCTTTCTACTACGGCTGACTTGTGTCGTCAACCCTCCCCTCACAGCACGGTTTCTTCCCTCTCTGGCGGAAGGGTCAAGCGTGAAAGAGACGTTTCCGGCGAGGATATTGAAGAAGAGAAAGCTTCTTCTCGGGTTAGTGATGAGGAGGAAGATGGGTCTAATGCTAGGAAGAAACTTAGGCTAACTAAAGAACAATCCGCCCTCTTGGAGGAGAGCTTCAAACTTCACTGCACTCTCAACCCTAAGCAAAAACAAGCCTTAGCCAGAGAGTTGAATCTTCGGCCTCGACAAGTTGAAGTTTGGTTCCAGAACAGAAGAGCCAGGACAAAGCTAAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACAGACGAAAACAGAAGACTGCAAAAAGAGCTGCAAGAATTGAAAGCCCTGAAACTAACCAAGCCTCTGTTCATGCAAATGCCAGCGGCAACACTCACCATGTGCCCCTCCTGCGAGCGGATCGGCGGCGCCACCGCCACTGTTAACGGCAACGGGAATTCCAAGGCCGTATTTTCAATGGCTCCAAAGCCCCAGTTTTACAAACCCTTCACCAATCCCTCTGCTGCTTGCTAA 771 49.94 MGFDDLPNTGLLLGLGLTLQSKPACLSQKPNNPVDLFSFPAVESEPSLTLGLSTTADLCRQPSPHSTVSSLSGGRVKRERDVSGEDIEEEKASSRVSDEEEDGSNARKKLRLTKEQSALLEESFKLHCTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLTKPLFMQMPAATLTMCPSCERIGGATATVNGNGNSKAVFSMAPKPQFYKPFTNPSAAC 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5513364 5515302 + Cp4.1LG19g10450.1 Cpe19g00701 486109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00701 256 Pfam Homeobox associated leucine zipper 163 197 IPR003106 GO:0006355|GO:0043565
Cpe19g00701 256 ProSiteProfiles 'Homeobox' domain profile. 103 163 IPR001356 GO:0003677
Cpe19g00701 256 Pfam Homeodomain 107 161 IPR001356 GO:0003677
Cpe19g00701 256 ProSitePatterns 'Homeobox' domain signature. 138 161 IPR017970 GO:0000981|GO:0006355
Cpe19g00701 256 PANTHER - 1 256 - -
Cpe19g00701 256 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 1 256 - -
Cpe19g00701 256 SMART HOX_1 105 167 IPR001356 GO:0003677
Cpe19g00701 256 MobiDBLite consensus disorder prediction 59 110 - -
Cpe19g00701 256 MobiDBLite consensus disorder prediction 59 73 - -
Cpe19g00701 256 SMART halz 163 206 IPR003106 GO:0006355|GO:0043565
Cpe19g00701 256 MobiDBLite consensus disorder prediction 74 110 - -
Cpe19g00701 256 Gene3D - 113 159 - -
Cpe19g00701 256 Coils Coil 169 199 - -
Cpe19g00701 256 CDD homeodomain 107 164 IPR001356 GO:0003677
Cpe19g00701 256 SUPERFAMILY Homeodomain-like 99 164 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00802 Cpe-Chr12:7237738 Cpe19g00701 Cpe-Chr19:5513364 5.28E-76 dispersed
Cpe14g00930 Cpe-Chr14:7818059 Cpe19g00701 Cpe-Chr19:5513364 2.60E-73 dispersed
Cpe17g00660 Cpe-Chr17:5354676 Cpe19g00701 Cpe-Chr19:5513364 2.08E-74 dispersed
Cpe01g00033 Cpe-Chr1:229314 Cpe19g00701 Cpe-Chr19:5513364 7.08E-51 transposed
Cpe01g00772 Cpe-Chr1:4505674 Cpe19g00701 Cpe-Chr19:5513364 8.59E-107 transposed
Cpe13g00382 Cpe-Chr13:4160635 Cpe19g00701 Cpe-Chr19:5513364 4.87E-35 transposed
Cpe10g00508 Cpe-Chr10:2995591 Cpe19g00701 Cpe-Chr19:5513364 4.25E-145 wgd
Cpe19g00701 Cpe-Chr19:5513364 Cpe06g00227 Cpe-Chr6:1208283 3.26E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51016 PF00046 Homeodomain 1.00E-15 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00701 K09338 - csv:101218782 398.667