Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe19g00722 | ATGTTCTACTACTCTGTTTTGCACTTTCTTCACACCCAAAGAGGGAAGAAAATGGAGCTCACTCAATATGGTTTCTTAGAGGAGTTATTAGCTTCAACGCCTTGGACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTATTCAAATGGGTTCAATGATTTCTTCCCAAATGGCTCGAATTTCAGTTCTTTTGAAGAAATTCCCCAAATGGGTACCTCTATTTCACCCCATTTTCCCGGTTTTCAAACGCCTACTGACTTTTCTTTCGCCGACCAACACCTCTACGGCAGTTTTCTTGAAGGCTTTGCATTACCGGAGGTGGATTCTTTATCGTACACTAAGAACAACGAAACCCCACCATTTGTTTCGCTAGAGGAGATTAGTGATAAGAACAGTGGTTTCCCTCCGACGGCGATGGAGGAGGAAGAATTTGGTTTTATGGAGTGTGAAGCGGCACCAAATGTTTGCAAACAGGAAATGGAGGTAATGGGTGGGCGTGAAACTAATGATTCTAAAATGGGTGTGGCAGAATTGGGGAAAAGAAGAAGCAACAAGGCTAAGAAGCTTGATGGACAGCCTTCGAAGAATTTAATGGCGGAAAGAAGAAGAAGGAGACGGTTGAATGATCGGCTATCAATGCTTAGAGCAATAGTTCCTAAAATAAGCAAGATGGATAGAACGTCTATTCTTGGAGACACGATCGATTACGTGAAAGAGCTGCTTGAAAGAATCAATAACTTGAAAGAAGAAGATTCAAAGCATGCAAGTCTAAATGGGATCTCCAAAGAAAGGAAGTCCAATGAAGTTCTGTTCGACGTTGAAAGGAAGGAGATGGAGACTCGGATCGGCATTTGCTGTACGACGAGGCCAGGATTATTGCTATCCACCGTCAACACATTAGAGGCATTGGGCCTAGAGATTCAGCAGTGTGTTATTAGCTGCTTCAATGATTTCTCAATGCAAGCTTCTTGTTCAGAGGGAAGTTCTCAGAAAGCAGTGCCAAGTTCTGATGATATAAAGGAGGCATTGTTCAGAAATGCAGGCTATGGAGGAAAGTGCTTGTAG | 1062 | 43.5 | MFYYSVLHFLHTQRGKKMELTQYGFLEELLASTPWTSSSSSSSSSYSNGFNDFFPNGSNFSSFEEIPQMGTSISPHFPGFQTPTDFSFADQHLYGSFLEGFALPEVDSLSYTKNNETPPFVSLEEISDKNSGFPPTAMEEEEFGFMECEAAPNVCKQEMEVMGGRETNDSKMGVAELGKRRSNKAKKLDGQPSKNLMAERRRRRRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERINNLKEEDSKHASLNGISKERKSNEVLFDVERKEMETRIGICCTTRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSSQKAVPSSDDIKEALFRNAGYGGKCL | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 5635671 | 5638218 | - | Cp4.1LG19g10180.1 | Cpe19g00722 | 486130 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe19g00722 | 353 | Pfam | Helix-loop-helix DNA-binding domain | 196 | 239 | IPR011598 | GO:0046983 | |
Cpe19g00722 | 353 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 190 | 239 | IPR011598 | GO:0046983 | |
Cpe19g00722 | 353 | PANTHER | HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED | 21 | 353 | - | - | |
Cpe19g00722 | 353 | SMART | finulus | 196 | 245 | IPR011598 | GO:0046983 | |
Cpe19g00722 | 353 | Coils | Coil | 229 | 249 | - | - | |
Cpe19g00722 | 353 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 193 | 251 | IPR036638 | GO:0046983 | |
Cpe19g00722 | 353 | Gene3D | - | 191 | 261 | IPR036638 | GO:0046983 | |
Cpe19g00722 | 353 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 21 | 353 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe19g00722 | Cpe-Chr19:5635671 | Cpe04g00600 | Cpe-Chr4:6299847 | 3.54E-21 | dispersed | |
Cpe10g00525 | Cpe-Chr10:3080435 | Cpe19g00722 | Cpe-Chr19:5635671 | 1.91E-179 | wgd | |
Cpe11g00494 | Cpe-Chr11:2865517 | Cpe19g00722 | Cpe-Chr19:5635671 | 6.47E-64 | wgd | |
Cpe19g00722 | Cpe-Chr19:5635671 | Cpe07g00150 | Cpe-Chr7:849756 | 1.56E-07 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51019 | PF00010 | HLH | 2.40E-09 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe19g00722 | - | - | cmax:111497242 | 650.203 |