Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00722 ATGTTCTACTACTCTGTTTTGCACTTTCTTCACACCCAAAGAGGGAAGAAAATGGAGCTCACTCAATATGGTTTCTTAGAGGAGTTATTAGCTTCAACGCCTTGGACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTATTCAAATGGGTTCAATGATTTCTTCCCAAATGGCTCGAATTTCAGTTCTTTTGAAGAAATTCCCCAAATGGGTACCTCTATTTCACCCCATTTTCCCGGTTTTCAAACGCCTACTGACTTTTCTTTCGCCGACCAACACCTCTACGGCAGTTTTCTTGAAGGCTTTGCATTACCGGAGGTGGATTCTTTATCGTACACTAAGAACAACGAAACCCCACCATTTGTTTCGCTAGAGGAGATTAGTGATAAGAACAGTGGTTTCCCTCCGACGGCGATGGAGGAGGAAGAATTTGGTTTTATGGAGTGTGAAGCGGCACCAAATGTTTGCAAACAGGAAATGGAGGTAATGGGTGGGCGTGAAACTAATGATTCTAAAATGGGTGTGGCAGAATTGGGGAAAAGAAGAAGCAACAAGGCTAAGAAGCTTGATGGACAGCCTTCGAAGAATTTAATGGCGGAAAGAAGAAGAAGGAGACGGTTGAATGATCGGCTATCAATGCTTAGAGCAATAGTTCCTAAAATAAGCAAGATGGATAGAACGTCTATTCTTGGAGACACGATCGATTACGTGAAAGAGCTGCTTGAAAGAATCAATAACTTGAAAGAAGAAGATTCAAAGCATGCAAGTCTAAATGGGATCTCCAAAGAAAGGAAGTCCAATGAAGTTCTGTTCGACGTTGAAAGGAAGGAGATGGAGACTCGGATCGGCATTTGCTGTACGACGAGGCCAGGATTATTGCTATCCACCGTCAACACATTAGAGGCATTGGGCCTAGAGATTCAGCAGTGTGTTATTAGCTGCTTCAATGATTTCTCAATGCAAGCTTCTTGTTCAGAGGGAAGTTCTCAGAAAGCAGTGCCAAGTTCTGATGATATAAAGGAGGCATTGTTCAGAAATGCAGGCTATGGAGGAAAGTGCTTGTAG 1062 43.5 MFYYSVLHFLHTQRGKKMELTQYGFLEELLASTPWTSSSSSSSSSYSNGFNDFFPNGSNFSSFEEIPQMGTSISPHFPGFQTPTDFSFADQHLYGSFLEGFALPEVDSLSYTKNNETPPFVSLEEISDKNSGFPPTAMEEEEFGFMECEAAPNVCKQEMEVMGGRETNDSKMGVAELGKRRSNKAKKLDGQPSKNLMAERRRRRRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERINNLKEEDSKHASLNGISKERKSNEVLFDVERKEMETRIGICCTTRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSSQKAVPSSDDIKEALFRNAGYGGKCL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5635671 5638218 - Cp4.1LG19g10180.1 Cpe19g00722 486130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00722 353 Pfam Helix-loop-helix DNA-binding domain 196 239 IPR011598 GO:0046983
Cpe19g00722 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 190 239 IPR011598 GO:0046983
Cpe19g00722 353 PANTHER HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED 21 353 - -
Cpe19g00722 353 SMART finulus 196 245 IPR011598 GO:0046983
Cpe19g00722 353 Coils Coil 229 249 - -
Cpe19g00722 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 251 IPR036638 GO:0046983
Cpe19g00722 353 Gene3D - 191 261 IPR036638 GO:0046983
Cpe19g00722 353 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 21 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00722 Cpe-Chr19:5635671 Cpe04g00600 Cpe-Chr4:6299847 3.54E-21 dispersed
Cpe10g00525 Cpe-Chr10:3080435 Cpe19g00722 Cpe-Chr19:5635671 1.91E-179 wgd
Cpe11g00494 Cpe-Chr11:2865517 Cpe19g00722 Cpe-Chr19:5635671 6.47E-64 wgd
Cpe19g00722 Cpe-Chr19:5635671 Cpe07g00150 Cpe-Chr7:849756 1.56E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51019 PF00010 HLH 2.40E-09 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00722 - - cmax:111497242 650.203