Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00728 ATGGAGAAAGGCAAAAGAAGAAGCACACAGCCATGGATTTGTAAGCTTGAGCTCACTCCAATGGTGCTCCTTCTCTTATTCATCTTCACTTTATCGCTCGCCAAAGCACGGCCACAACAGCAGCATTCGTCCCCGCCGTTGGCGCCCGACGTATTCCTACAATGGCAGATTCGTGGACAGGTGGCAATGGACAATGGGTTGATTCGAGTCACTTTTTCTCGCGAAGGCAATGTTATTGGCATAAAATACAATAACATGGATAACATACTTGATTATCACAATGCATACAATAACAGAGCATATTTGGATTTGGCTTGGAACACCCCAAATCAGACAAGTATTATTGAAAGAGTAAAGGCAACCAATGTGAAGGTGATTACAGCCACGGGTGACCAAATAGAGCTTTCATTCACCCGATATTGGAATTCTTCAGACCCTTTCTCAGTCCCTTTGAACATAGACCAGAGGTATATTCTGAGACGGGGCGATTCTGGATACTATACGTATAGCATGTTTGAACGGCTGGAAACTTGGCCTGAACTTGAAGTGGACGAGATCAGAATCGCGTACAAGGCCCTAAGAGACAAATTTCATTACATGGCGGTATCAGACGATCGACAGAGGACCATGCCCACGCAACTGGACCGGATGACTGGGCAGCGTCTCGCTTACGCGGAGGCGGTTCTCATAACCCAACCCACCAACCCGGACGTCAAAGGAGAGGTGGACGATAAGTACCAGTACTCGCAAGAGAATATGGATAACAGGGTGCATGGATGGGTGTCTAGGGACCCAAACGTGGGGTTCTGGATGATCACGGCCAGTGATGAGTTTCGTTCGGGGGGGCCGGTCAAGCAAGAACTCACATCCCACGTTGGCCCCACAACTCTTACGGTGTTCAAGAGTAATCATTATGCGGGTAAGGATGCTTCGATGAGATTTAAGGAGGGAGAAGCATGGAAAAAGGTTTTCGGTCCGGTTTTCATTTATCTAAACTCGGACCCGACCGGCACTGAAACCCCGGGTTCACTATGGGAAGATGCTAAAAACCAGATGAGGATAGAGAGGGGGAAGTGGCCGTATGGGTTCGTTGAGTCAAAAGAATTTCCAAGATCAGAGGAAAGAGGCAGCGTTAGTGGCCGATTAATGGTCCGAGATAGATTCGCCAAGAAGGGGCAAATGTGGGCCGATTCTGCGTTTGTGGGCCTCGCAGCTCCCGGGGAAGTGGGGTCTTGGCAAACTGAGAGCAAGGGGTATCAATTTTGGACACGAGCGGATGAAGATGGAAATTTCTTCATTCAAAATATAAGGCCGGGAAACTACAATCTCTACGCATGGGTACCCGGCGTCATTGGCGATTACAAGTACGACGGCGACATCATTGTCACGGCGGCGAGTTCCACTAACCTGAGCGTGCTGATTTACGACCCACCACGACGAGGCCCAACTCTGTGGGAGATCGGCATCCCTGACCGGAAGGCAGCCGAGTTCTACATACCGGATCCTGAACCCACCTTAACGAGCCACTTTTACAACAACACCAAAATTCAAACCCCAGATAAGTTCCGGCAGTACGGTATCTGGGCACGCTACGCTGATTTGTACCCTGATCAGGATCTGGTGTACAACGTTGACACGGATGACTACCGTCGCCATTGGTTTTACGCTCACGTAACAAGAGCCACTGGATCCGGGGACTACCAAGCAACTACGTGGCAGATTGTGTTTCGTCTTCGAGGACCCATAAAGACCGGAACCTATACGCTCCGGTTGGCGTTGGCCTCCAGTAGTCATGGGGTGGTCGATGTCCGGTTCAACAACCCGTTGGCCAGACGACCTGCTTTCACGACCGGGTATTGGAACGCAGGAAGAGATAACGCAATTGCAAGACATGGCATTCATGGGCTGTATAGGTTATTCAACTTCGATGTTCCCATTTATTATTTGGTCGAAGGAGACAACGTAATCTATCTTACACAGAGAAGACATGCGGGTCCTTTCCTAGGAGTAATGTACGACTACATACGATTTGAAGGTGTAGAGTAG 2046 49.36 MEKGKRRSTQPWICKLELTPMVLLLLFIFTLSLAKARPQQQHSSPPLAPDVFLQWQIRGQVAMDNGLIRVTFSREGNVIGIKYNNMDNILDYHNAYNNRAYLDLAWNTPNQTSIIERVKATNVKVITATGDQIELSFTRYWNSSDPFSVPLNIDQRYILRRGDSGYYTYSMFERLETWPELEVDEIRIAYKALRDKFHYMAVSDDRQRTMPTQLDRMTGQRLAYAEAVLITQPTNPDVKGEVDDKYQYSQENMDNRVHGWVSRDPNVGFWMITASDEFRSGGPVKQELTSHVGPTTLTVFKSNHYAGKDASMRFKEGEAWKKVFGPVFIYLNSDPTGTETPGSLWEDAKNQMRIERGKWPYGFVESKEFPRSEERGSVSGRLMVRDRFAKKGQMWADSAFVGLAAPGEVGSWQTESKGYQFWTRADEDGNFFIQNIRPGNYNLYAWVPGVIGDYKYDGDIIVTAASSTNLSVLIYDPPRRGPTLWEIGIPDRKAAEFYIPDPEPTLTSHFYNNTKIQTPDKFRQYGIWARYADLYPDQDLVYNVDTDDYRRHWFYAHVTRATGSGDYQATTWQIVFRLRGPIKTGTYTLRLALASSSHGVVDVRFNNPLARRPAFTTGYWNAGRDNAIARHGIHGLYRLFNFDVPIYYLVEGDNVIYLTQRRHAGPFLGVMYDYIRFEGVE 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5660815 5664105 + Cp4.1LG19g10110.1 Cpe19g00728 486136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00728 681 Pfam Rhamnogalacturonate lyase family 51 242 IPR010325 -
Cpe19g00728 681 Pfam Polysaccharide lyase family 4, domain II 397 470 IPR029413 -
Cpe19g00728 681 Gene3D - 60 345 IPR014718 GO:0030246
Cpe19g00728 681 Pfam Polysaccharide lyase family 4, domain III 483 676 IPR029411 -
Cpe19g00728 681 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 57 679 - -
Cpe19g00728 681 Gene3D - 371 473 - -
Cpe19g00728 681 SUPERFAMILY Galactose-binding domain-like 481 678 IPR008979 -
Cpe19g00728 681 CDD RGL4_N 60 336 - -
Cpe19g00728 681 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 57 679 - -
Cpe19g00728 681 CDD RGL4_C 485 678 - -
Cpe19g00728 681 SUPERFAMILY Galactose mutarotase-like 153 336 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cpe19g00728 681 CDD RGL4_M 374 473 IPR029413 -
Cpe19g00728 681 Gene3D - 481 678 - -
Cpe19g00728 681 SUPERFAMILY Starch-binding domain-like 373 472 IPR013784 GO:0030246
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00459 Cpe-Chr6:2689080 Cpe19g00728 Cpe-Chr19:5660815 1.45E-145 dispersed
Cpe10g00780 Cpe-Chr10:4434707 Cpe19g00728 Cpe-Chr19:5660815 0 dispersed
Cpe01g00780 Cpe-Chr1:4566550 Cpe19g00728 Cpe-Chr19:5660815 0 wgd
Cpe10g00529 Cpe-Chr10:3101888 Cpe19g00728 Cpe-Chr19:5660815 3.40E-85 wgd
Cpe19g00728 Cpe-Chr19:5660815 Cpe07g00181 Cpe-Chr7:1116332 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00728 K18195 - csv:101206696 956.436