Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00732 ATGACTGGTAAAGCAGACAAGGTCTACGTTGCTATCGGGAATGATCTTCACGATGGATTTAAGACATTGGGGTGGACTCTTGGGAAATGGAAGTCTCAACCGATTTCAATTGTGATTCTTCACATCGCCTATACCAATTCCCAGGAATATGTCTACACTCCATTCGGAAAGCTCCCTGCGAGTTCTGTAAGTGAAGACAAAGTGAAAGTTCTGAGAAAATATGAGCAGGAAAAGATCGATAAGCTACTTTCTAAATATGTAGATTTTTGTGGCAAGGTAAAAGCCGAAATACTCAAGGTTGAGAAATCTGATGAACCTATTCATAGGTTCCTGGTTGACTTGATTTCAGAATTGGGAATCACCAATTTAGTCATTGGTTTTACGTTTATGAAATCTTCATCTTGGAAATCAAAGAATGCAATTAGTGGATCATTTTACATTTACAGAAACAAGGCCAATTCTTGTGAGTTGTTTGTAATATGGGGAGGAAAACAGGTATTTCTCAGAGATGAAAGAATCATGGAAGATGATAAAGGTGTAAGGATCTCTAAAATCAGCAGCAAGCATTCATTCAAAGACTGGCTGGGAAAGATGTTCATGGAAGATCCAATCTATTCCACAGAGAGGATGTTGAGTCTCTCGTCTTCTTCACCAAGTAGTTCAAATTCCTTGAGTTCTCGAAATTATTGGGACAATAATATCCATGAACTAGAGAACTACTACGAGGAATTACTATCGTTGAATTTGCAGGAAGAAAAAGACTGCGAGCAGGATCAAGAGGATGTTCTTGAAACTTCAAGTTCAACCCAGTTCAATATTCTGGATCATCCTGATTCAGATATGAATACTGAGGAAAGCATTGAGCATCTTAGGACTAAAATAGAGGAAGCTCGCAAGACCATCCAGTTGATGAAAGATGAAGCAAAGGGTAGTGCTGAAAGGCAAGCTAAAGCAGAGTGGGCCATTAATCTGTGCAGTCAGCGGACCGAAGAGCTTGAAGCACAGATAAAAGAAGAGGTTACAATTAGGGAAGAGTTGCAGAAAGAATTAGACCCTGCCAAAGAATGCATTCTTGAAATAGTACGTGATATCGAGGAAAGCAAGAACAGATTAAGTTCACTTCTCGAACTGCAAGCTGAGCTATCAAGGAAGCTCCAAATTTCCACTGCAGGAAAATCGCGTATAGAAGCTCAATTGGAGAAGACAGCGAAAACAAAAGAAGGGATGGTGAGAGAAATCGAGGAGCTGAGGAGACAAAGAGACATTCTTAACCGGAGAATTGAGTTCTGCAAAGAGAAAGATGCCATTGGAATGGCTGAAAGGTCGAGTGAAGTGACTTGCAGTACAAGAGTTTACACGGCTGAAGAGATCAGATTAGCCACCGAGGGCTTTTCAGAACAAATGAGATTGAGTTCCCGGGTGTACAGAGGACGTATCAACCATAATTCAATTGCAATCCAAATGATCGACTCAGGAAATTGTCTGTCAGAAGAAGATTTTCAATCTAAGGTGGAGCTTTTAAGCCATATCCGTCACCCTCATCTGATTGCCATGATGGGATTCTGCTCCGAGCTCAAATGTATTGTCTTTGATTACATGCATAATGGTAGTTTGAGTGACAGACTACTTCCAACGAACAAAAGATCCAGGAAAATACGCCGCCCTCTCATGTGGCATGACAGAATCCGTATAGCATCAGAGGTATGCTCGGGCCTGAGCTTCCTTCACCAGGCTCAACCTCAGCCCATTTCTCATGGCAACCTCACCCTCTCCAAAATTCTCCTGGACCAAAACCTTGTCGCCAAAGTCACTGGTTTTGGGCTCGCCGAATTGGATGAAGCTGGTGGTATTGCGTTGGACATCCAGGCTTTTGGGGCTCTGCTGCTACATCTGGTAACTGGGAGGAATTGGACAGGGCTGATTGAGAAGGCACTGACGATGGGAAAGGTTGGTATTGTCCAGATTTTAGACGACGAGGCTGGACAGTGGCCGTTGGACTTGGTTGATGGGCTAGTTGATCTGGCTTTGAGATGCGTAACCCCAAATGGTTTAAATTCAGAGCTTAACTTGGCGACAGCCATGGAGGAGATCGATGAGATCAAGGCGAAAGCAGATGATCTAGTGGGAAACGAAGGTGCAAATGCAACTAATGAGGATGTAGATGATGTGCCAAGAATCTTCATCTGTCCCATTTTGCAGGAAGTGATGAAGAACCCACATGTGGCAGCAGATGGGTTCTCGTACGAGTTAGAGGCCATAGAAAAATGGATAATTGCAGGACACGATACATCACCAATGACCAACTTGAGGTTACAGCATCCTTATCTCACCCCTAATCACACACTTCGCTCTCTCATTCAAGACTGGCAAAATGAGACCTCAAATCTTTACACTTTAGATTTAGCGACTGATAGTTGA 2418 42.85 MTGKADKVYVAIGNDLHDGFKTLGWTLGKWKSQPISIVILHIAYTNSQEYVYTPFGKLPASSVSEDKVKVLRKYEQEKIDKLLSKYVDFCGKVKAEILKVEKSDEPIHRFLVDLISELGITNLVIGFTFMKSSSWKSKNAISGSFYIYRNKANSCELFVIWGGKQVFLRDERIMEDDKGVRISKISSKHSFKDWLGKMFMEDPIYSTERMLSLSSSSPSSSNSLSSRNYWDNNIHELENYYEELLSLNLQEEKDCEQDQEDVLETSSSTQFNILDHPDSDMNTEESIEHLRTKIEEARKTIQLMKDEAKGSAERQAKAEWAINLCSQRTEELEAQIKEEVTIREELQKELDPAKECILEIVRDIEESKNRLSSLLELQAELSRKLQISTAGKSRIEAQLEKTAKTKEGMVREIEELRRQRDILNRRIEFCKEKDAIGMAERSSEVTCSTRVYTAEEIRLATEGFSEQMRLSSRVYRGRINHNSIAIQMIDSGNCLSEEDFQSKVELLSHIRHPHLIAMMGFCSELKCIVFDYMHNGSLSDRLLPTNKRSRKIRRPLMWHDRIRIASEVCSGLSFLHQAQPQPISHGNLTLSKILLDQNLVAKVTGFGLAELDEAGGIALDIQAFGALLLHLVTGRNWTGLIEKALTMGKVGIVQILDDEAGQWPLDLVDGLVDLALRCVTPNGLNSELNLATAMEEIDEIKAKADDLVGNEGANATNEDVDDVPRIFICPILQEVMKNPHVAADGFSYELEAIEKWIIAGHDTSPMTNLRLQHPYLTPNHTLRSLIQDWQNETSNLYTLDLATDS 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5682193 5686343 + Cp4.1LG19g10130.1 Cpe19g00732 486140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00732 805 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 5 792 - -
Cpe19g00732 805 SUPERFAMILY Protein kinase-like (PK-like) 446 682 IPR011009 -
Cpe19g00732 805 Pfam U-box domain 723 794 IPR003613 GO:0004842|GO:0016567
Cpe19g00732 805 PANTHER OS02G0152300 PROTEIN 5 792 - -
Cpe19g00732 805 Pfam Protein tyrosine and serine/threonine kinase 474 610 IPR001245 GO:0004672|GO:0006468
Cpe19g00732 805 CDD RING-Ubox_WDSUB1_like 727 768 - -
Cpe19g00732 805 Coils Coil 329 349 - -
Cpe19g00732 805 SUPERFAMILY RING/U-box 713 795 - -
Cpe19g00732 805 Coils Coil 399 433 - -
Cpe19g00732 805 Gene3D Phosphorylase Kinase; domain 1 435 532 - -
Cpe19g00732 805 ProSiteProfiles U-box domain profile. 722 796 IPR003613 GO:0004842|GO:0016567
Cpe19g00732 805 SMART Ubox_2 726 789 IPR003613 GO:0004842|GO:0016567
Cpe19g00732 805 Coils Coil 287 314 - -
Cpe19g00732 805 Gene3D Transferase(Phosphotransferase) domain 1 533 616 - -
Cpe19g00732 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 721 797 IPR013083 -
Cpe19g00732 805 Coils Coil 364 384 - -
Cpe19g00732 805 ProSiteProfiles Protein kinase domain profile. 454 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00732 805 Coils Coil 690 710 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00732 Cpe-Chr19:5682193 Cpe03g01733 Cpe-Chr3:13138432 1.36E-09 dispersed
Cpe19g00732 Cpe-Chr19:5682193 Cpe08g00548 Cpe-Chr8:3585977 4.73E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63047 PF07714 PK_Tyr_Ser-Thr 1.60E-18 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00732 - - cmos:111463274 1494.18