Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00744 ATGGCGGATAGCTTTTACTGTACAGAGAGTGTCAATACTTGCTTTGATGAGCTTGAATGTAATGCCACAAACAATGAGTTTGAGCGAATCGAGTGTTTTGGATCCGGGAATTCGATGGTCTCTGCGATACAGAGTGAACAGAGGATAAGAGAAATGGTTGAGCAAGAGATTCAGCATTTGCCTAGACATGATTATCTTAAGAGATTGCGTTGTGGGGCATTGGATTCCAAGTTTAGGAGAGACGCTATTGATTGGATTTCGAAGGCTCATGCCCATTACAGCTTTGGAGCTTTGAGTCTATGTCTATCTATGAACTACTTGGATCGTTTCCTCTCAGAATATCACATGCCTATGGATAAAAGCTGGAGTGTGCAGCTGCTGTCAGTAGCTTGTATGTCTCTGGCAGCCAAGATGGAGGAGACACAAGTTCCTCTTCCCATAGATTTACAGGTTGAGGAACCCAAGTTCGTGTTCGAATCAAAAACCATTCTAAGAATGGAGCTTCTGGTTCTAAGCAGGTTGAAATGGAAGATGCGAGCCATTACTCCATTTTCTTTCATTGATTATTTCCTTACTAACATCACTGTTGAGCCGCACGAACCGAGGCTATCCTTATTCAAATCTTCACAGCTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAAACCCTCTGAAATTGCTTTGGCTGTGGCTATGTCTGTTTCTGGAGTAGTTCAAGCAGCAGACATCAATAAAGCAATCCTTGCTTTTCCATACATGGAGAAAGAGAGAGTAATGAAGTGTATTGAGCTGATAAGAGATTTTTCATTGATTAGTAATGTATATGGGGTTGGTGGTTCAGTTCCTCAGAGCCCTGTTGGAGTGTTGGATGCAGCTTGTTTGAGTTACAAAACAGAGGAATTAACAGCAGGGTCGTGCGGCAATTCTTCTTCTAGAGACAGTCCAGACAGCAAGAGAAGGAGACTAGACAGACCATGA 987 42.45 MADSFYCTESVNTCFDELECNATNNEFERIECFGSGNSMVSAIQSEQRIREMVEQEIQHLPRHDYLKRLRCGALDSKFRRDAIDWISKAHAHYSFGALSLCLSMNYLDRFLSEYHMPMDKSWSVQLLSVACMSLAAKMEETQVPLPIDLQVEEPKFVFESKTILRMELLVLSRLKWKMRAITPFSFIDYFLTNITVEPHEPRLSLFKSSQLILSTIKGIDFLEFKPSEIALAVAMSVSGVVQAADINKAILAFPYMEKERVMKCIELIRDFSLISNVYGVGGSVPQSPVGVLDAACLSYKTEELTAGSCGNSSSRDSPDSKRRRLDRP 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5745874 5748135 + Cp4.1LG19g10070.1 Cpe19g00744 486152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00744 328 SUPERFAMILY Cyclin-like 39 178 IPR036915 -
Cpe19g00744 328 Pfam Cyclin, C-terminal domain 181 272 IPR004367 -
Cpe19g00744 328 ProSitePatterns Cyclins signature. 79 110 IPR006671 -
Cpe19g00744 328 PANTHER CYCLINS 42 324 IPR039361 -
Cpe19g00744 328 Pfam Cyclin, N-terminal domain 50 178 IPR006671 -
Cpe19g00744 328 SUPERFAMILY Cyclin-like 162 278 IPR036915 -
Cpe19g00744 328 SMART cyclin_7 84 172 IPR013763 -
Cpe19g00744 328 Gene3D - 50 266 - -
Cpe19g00744 328 CDD CYCLIN 79 171 IPR013763 -
Cpe19g00744 328 PANTHER CYCLIN-D4-1-LIKE 42 324 - -
Cpe19g00744 328 Gene3D - 62 179 - -
Cpe19g00744 328 MobiDBLite consensus disorder prediction 305 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00393 Cpe-Chr1:2279905 Cpe19g00744 Cpe-Chr19:5745874 2.42E-63 dispersed
Cpe14g00259 Cpe-Chr14:1489945 Cpe19g00744 Cpe-Chr19:5745874 3.20E-63 dispersed
Cpe19g00744 Cpe-Chr19:5745874 Cpe11g00137 Cpe-Chr11:738016 1.09E-52 dispersed
Cpe10g00541 Cpe-Chr10:3185468 Cpe19g00744 Cpe-Chr19:5745874 4.39E-166 wgd
Cpe11g00467 Cpe-Chr11:2638096 Cpe19g00744 Cpe-Chr19:5745874 1.05E-95 wgd
Cpe19g00744 Cpe-Chr19:5745874 Cpe07g00182 Cpe-Chr7:1142682 1.81E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00744 K18810 - csv:101209378 456.062