Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe19g00746 | ATGGATTTCGAAGATCAAGATGACCACGACGACGACATGGACATGGCGGCGGCGGCGGCGGCGGCGAGTTACGACCCTTTGCAGGGTAACTCAGGTGGGCGAGTCAAAACCCCAACCAGTACGGACCCAAGTGGACAGAGGAAACCCAAGTACAGAGAGTGCTTAAAAAATCACGCGGTTGGCATTGGAGGTCACGCCCTTGACGGCTGCGGCGAATTTCTAGCAGCTGGAGCTGAAGGAACTCTCGACGCACTTAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAGACGGATAACCTCAACGCCACCGCGGTTGGTGTTGGACTTGGAATAGCAGAGCCATTTCTATTGCCACACCCGAGTCAGTTCTCTCCTTACTACCGAACCCCAACTGGGTACCTCCACGTGGCACCACATCACAGACCTCTAGCTCTCCCCTCCACCTCCGGTGGCGGTGGTGGTGGTGGCACCCTGAGCAGGGAGGAGCAGGAGGACATGTCGAATCCGAGCGGTGGCGGGGGAGGGAGTAGCAGCTTAGGGAGGAAGAGATTTAGAACAAAGTTCACACAAGAACAGAAGGACAGAATGCTGGGACTGGCGGAGACATTGGGGTGGAGGATCCAAAAACACGATGAGGCGTTGGTGCAGCAGTTCTGTAACGAGACCGGAGTGAAGCGGCACGTGCTTAAAGTGTGGATGCATAATAACAAGAACACTCTTGGTACTTAG | 741 | 55.87 | MDFEDQDDHDDDMDMAAAAAAASYDPLQGNSGGRVKTPTSTDPSGQRKPKYRECLKNHAVGIGGHALDGCGEFLAAGAEGTLDALKCAACNCHRNFHRKETDNLNATAVGVGLGIAEPFLLPHPSQFSPYYRTPTGYLHVAPHHRPLALPSTSGGGGGGGTLSREEQEDMSNPSGGGGGSSSLGRKRFRTKFTQEQKDRMLGLAETLGWRIQKHDEALVQQFCNETGVKRHVLKVWMHNNKNTLGT | 246 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 5752708 | 5755400 | - | Cp4.1LG19g09980.1 | Cpe19g00746 | 486154 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe19g00746 | 246 | MobiDBLite | consensus disorder prediction | 145 | 186 | - | - | |
| Cpe19g00746 | 246 | MobiDBLite | consensus disorder prediction | 30 | 45 | - | - | |
| Cpe19g00746 | 246 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 50 | 100 | IPR006456 | - | |
| Cpe19g00746 | 246 | MobiDBLite | consensus disorder prediction | 165 | 179 | - | - | |
| Cpe19g00746 | 246 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 51 | 100 | IPR006456 | - | |
| Cpe19g00746 | 246 | Gene3D | - | 169 | 245 | - | - | |
| Cpe19g00746 | 246 | SUPERFAMILY | Homeodomain-like | 170 | 243 | IPR009057 | - | |
| Cpe19g00746 | 246 | Pfam | ZF-HD protein dimerisation region | 50 | 101 | IPR006456 | - | |
| Cpe19g00746 | 246 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 1 | 35 | 245 | - | - | |
| Cpe19g00746 | 246 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 35 | 245 | - | - | |
| Cpe19g00746 | 246 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
| Cpe19g00746 | 246 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 185 | 242 | IPR006455 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe07g00420 | Cpe-Chr7:2710667 | Cpe19g00746 | Cpe-Chr19:5752708 | 2.00E-61 | dispersed | |
| Cpe19g00746 | Cpe-Chr19:5752708 | Cpe19g00812 | Cpe-Chr19:6085016 | 2.12E-59 | dispersed | |
| Cpe01g00763 | Cpe-Chr1:4457644 | Cpe19g00746 | Cpe-Chr19:5752708 | 1.19E-72 | wgd | |
| Cpe10g00542 | Cpe-Chr10:3189658 | Cpe19g00746 | Cpe-Chr19:5752708 | 3.60E-125 | wgd | |
| Cpe11g00465 | Cpe-Chr11:2623784 | Cpe19g00746 | Cpe-Chr19:5752708 | 3.70E-66 | wgd | |
| Cpe19g00746 | Cpe-Chr19:5752708 | Cpe07g00186 | Cpe-Chr7:1166653 | 4.41E-34 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 51021 | PF04770 | ZF-HD_dimer | 1.00E-28 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe19g00746 | - | - | csv:101204784 | 394.43 |