Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00758 ATGAATCCTCCCACCTTCCCTATGGAATTTTCCGGCGATCCACTTTCGACGAATCTCACCGGAAGTGATGACCCGCGGATTCCGTTGCAGAACCTCTCGACGATCTCTTCCAGAATGGATGCCGTCCAAATCTTCCTATCCGAGAACATCGACAGAGAAATTCGCATCAGCAATCAACAGATGGATGCGGTTTCGTCTGAAATCGCCTCCGCAATCCAACAGATCGTCGTCAACGGCGCTGCTCTTCTAGCCTTGGCGCAAGTGAAAACCTCGAATACGCCGGGTTTGAAAGCCTCGACGAGTCGTACTCATTCGATTCCGGTTACAGAGAAATCAATGGCGGAGCTGAAGGTCGAGGGTGTAGATGAGATTACGAGAATCGAATCGGAGGAATTTGAGATGGATTGTGAAATAGTGGAGATGGACGCGATGGAACTGCTAGCGGAGCACATCCATTTCTGTGAAATCTGCGGGAAAGGGTTCAAGCGGGATGCGAATTTGCGGATGCACATGCGGGCCCATGGGAATCAATTCAAGACCCCTGAGGCGTTGGCCAAGCCGTTAGATGGTGTTGTCGTGGACCACAAGGCGAAGCGCACGCGGTTTTCGTGCCCTTACGATGGCTGTGTAAGGAACAAAACGCACAACAAGTTTAGGCCGTTGAAATCGTTGATTTGCGTCAAGAATCACTTCAAGCGGAGCCACTGCCCCAAGATGTTCTGCTGCAATCGCTGCAACAAGAAGAGTTTCTCTGTAATGGCCGACTTGAAGAGCCACTTGAAGCACTGCGGGGAGTCGAAGTGGCGGTGTTCGTGTGGAACGACCTTTTCCCGTAAGGACAAGTTGTTCGGTCATATGGCGCTGTTCGAAGGCCACATGCCGGCGGTGGCGGACGACGACGGGAAAGGGAAAGCCACGGCGGCGGAGGCGGCGGCGACGCCGGAAATGGATGAAGATGGGGACAGTAATCGGATTTCGAAGGACGTTAATTTCCCAGACGCCTGGAATAGTCCAGATGATGGATCTTTCGAATCGTTTCTTGATGGGTTTGGTTCGATTGAGAATCACTGTTTGCAGGAGGTGCTGGGATTCCCTCATGGTTTCGATTCGGAATCGGAATGGAAATTTTGTTCTGATTAG 1140 51.75 MNPPTFPMEFSGDPLSTNLTGSDDPRIPLQNLSTISSRMDAVQIFLSENIDREIRISNQQMDAVSSEIASAIQQIVVNGAALLALAQVKTSNTPGLKASTSRTHSIPVTEKSMAELKVEGVDEITRIESEEFEMDCEIVEMDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDGVVVDHKAKRTRFSCPYDGCVRNKTHNKFRPLKSLICVKNHFKRSHCPKMFCCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVADDDGKGKATAAEAAATPEMDEDGDSNRISKDVNFPDAWNSPDDGSFESFLDGFGSIENHCLQEVLGFPHGFDSESEWKFCSD 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5830957 5832096 - Cp4.1LG19g09880.1 Cpe19g00758 486166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00758 379 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Cpe19g00758 379 Gene3D Classic Zinc Finger 228 297 - -
Cpe19g00758 379 MobiDBLite consensus disorder prediction 299 327 - -
Cpe19g00758 379 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 19 369 IPR044300 GO:0010044|GO:0010447
Cpe19g00758 379 MobiDBLite consensus disorder prediction 1 25 - -
Cpe19g00758 379 MobiDBLite consensus disorder prediction 11 25 - -
Cpe19g00758 379 Gene3D Classic Zinc Finger 152 175 - -
Cpe19g00758 379 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 19 369 - -
Cpe19g00758 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
Cpe19g00758 379 SUPERFAMILY beta-beta-alpha zinc fingers 149 175 IPR036236 -
Cpe19g00758 379 SMART c2h2final6 152 174 IPR013087 -
Cpe19g00758 379 SMART c2h2final6 268 292 IPR013087 -
Cpe19g00758 379 SMART c2h2final6 240 262 IPR013087 -
Cpe19g00758 379 SMART c2h2final6 202 235 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00758 Cpe-Chr19:5830957 Cpe20g00726 Cpe-Chr20:6157225 3.50E-69 dispersed
Cpe19g00758 Cpe-Chr19:5830957 Cpe06g00929 Cpe-Chr6:6880916 9.77E-80 transposed
Cpe19g00758 Cpe-Chr19:5830957 Cpe02g00925 Cpe-Chr2:7447298 1.16E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51023 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00758 - - cmax:111496804 725.702