Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe19g00793 | ATGCCTGAAGAAGCCATGACAGGTAGAGCGTCATCTGGAAGGACGCCGACGTGGAAGGAAAGGGAGAACAATAAGAGGAGGGAGAGACGGCGGAGGGCTATTGCTGCTAAGATCTACACTGGTCTCAGAACTCAGGGGAACTATAAGCTTCCTAAGCACTGTGATAACAACGAGGTCTTGAAGGCGCTTTGTAGTGAAGCTGGTTGGGTGGTTGAAGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCTCCTCCGATTGATATTGGCACTTCTGCTAACATGAGCGCCTGTTCTTCTCTTCAACCAAGCCCACAATCTTCATGTTTCCCAAGTCCTGTACCATCCTACCATGCCAGCCCTTCTTCATCCTCTTTTCCGAGCCCAACTCGATTTGATGGGAATCCATCTTATCTTTTGCCATTCCTTCAAAATATAACCTCTATACCTGCTAATCTCGCACCTCTCAGAACATCAAACAGTGCACCTGTTACGCCACCTCTTTCTTCCCCGACATCGAGGGGTTCAAAGCGAAAACCTGACTGGGAGTCCATTCCAAATAGCTACTTGACCTCTTTCCGCCACCCCCTCTACGCTGTCTCTGCTCCTTCAAGTCCTACAAGATGCCGCCATCTTACACCAGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTGGACTCTGGCCGCTGGGTCAGTTTCCAAACTGTAGCACCTTCTGTTGCTCCTCCCTCCCCTACATTTAATCTGATGAAACCAGTGAGCCAGCAAAACTCTCTCCACGATTCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTGCATCGGACAGGGGGCGAGGCTCTGAGTTCGAATTCGAGAAATTTGAGAATGGCAAAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGACGATTTGGAGCTTACACTTGGGAGTGGGAAGGCCCGTGGTTAA | 972 | 50.1 | MPEEAMTGRASSGRTPTWKERENNKRRERRRRAIAAKIYTGLRTQGNYKLPKHCDNNEVLKALCSEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSYLLPFLQNITSIPANLAPLRTSNSAPVTPPLSSPTSRGSKRKPDWESIPNSYLTSFRHPLYAVSAPSSPTRCRHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLHDSVDRHGAMGWGAASDRGRGSEFEFEKFENGKVKPWEGERIHEVGVDDLELTLGSGKARG | 323 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 5997709 | 6000233 | + | Cp4.1LG19g09440.1 | Cpe19g00793 | 486201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe19g00793 | 323 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Cpe19g00793 | 323 | MobiDBLite | consensus disorder prediction | 15 | 29 | - | - | |
| Cpe19g00793 | 323 | MobiDBLite | consensus disorder prediction | 157 | 175 | - | - | |
| Cpe19g00793 | 323 | Pfam | BES1/BZR1 plant transcription factor, N-terminal | 11 | 133 | IPR008540 | - | |
| Cpe19g00793 | 323 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 1 | 6 | 322 | - | - | |
| Cpe19g00793 | 323 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 3-RELATED | 6 | 322 | IPR033264 | GO:0003700|GO:0006351|GO:0009742 | |
| Cpe19g00793 | 323 | MobiDBLite | consensus disorder prediction | 157 | 183 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe19g00793 | Cpe-Chr19:5997709 | Cpe20g00481 | Cpe-Chr20:2783513 | 5.01E-49 | dispersed | |
| Cpe10g00589 | Cpe-Chr10:3457736 | Cpe19g00793 | Cpe-Chr19:5997709 | 0 | wgd | |
| Cpe11g00187 | Cpe-Chr11:1017927 | Cpe19g00793 | Cpe-Chr19:5997709 | 2.14E-90 | wgd | |
| Cpe19g00793 | Cpe-Chr19:5997709 | Cpe07g00438 | Cpe-Chr7:2812803 | 4.76E-91 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 51024 | PF05687 | BES1_N | 9.70E-64 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe19g00793 | K14503 | - | csv:101216171 | 555.058 |